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Anopheles gambiae
cluster # 4450 cluster # 4450       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4450#0 length = 920 sequences # 2  
consensus_4450#1 length = 173 sequences # 1  

consensusID : consensus_4450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 920
fasta sequence
                              [TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGGCAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCGGAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAGGCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAACTATTAATTTTCTTTTATCTTAA-TAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGCTACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGACTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANTCTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTCTAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAAACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCTAACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNGNGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACCCCGGAAAAACCCGNAAANCA]

[+] EMBL BX609763             [TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGGCAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCGGAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAGGCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAACTATTAATTTTCTTTTATCTTAA TAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AL931070             [                                                                                                                                                                                                                         ccgaggnGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCTCGGGTTTACTTGTATAAACGAACTATT ATTTTCTTTTATCTTAATTAAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTTTAACGCTACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGACTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANTCTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTCTAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAAACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCTAACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNGNGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACCCCGGAAAAACCCGNAAANCA]


>consensus_4450#0 TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGG CAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCG GAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAG GCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTT GATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGT TACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAAC TATTAATTTTCTTTTATCTTAATAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGA AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGC TACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGA CTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANT CTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTC TAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAA ACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCT AACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNG NGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACC CCGGAAAAACCCGNAAANCA



consensusID : consensus_4450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence
                              [GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTTTTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA]

[+] EMBL BX626405             [GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTTTTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA]


>consensus_4450#1 GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTT TTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAA GACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4450#0      TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGG 60
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      CAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCG 120
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      GAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAG 180
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      GCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTT 240
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      GATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGT 300
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      TACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAAC 360
consensus_4450#1      ------------GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAAC 48
                                  *** ****************** ********************* ***

consensus_4450#0      TATTAATTTTCTTTTATCTTAATAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGA 420
consensus_4450#1      TATTA-TTTTCTTTTATCTTAATAAAAAAA-GTACGAACTTTCGTCCGAGAGCAAAATGA 106
                      ***** ************************ ************* ***************

consensus_4450#0      AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGC 480
consensus_4450#1      AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTG 166
                      *********************************************** ***** *     

consensus_4450#0      TACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGA 540
consensus_4450#1      TGTNTAA----------------------------------------------------- 173
                      *                                                           

consensus_4450#0      CTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANT 600
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      CTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTC 660
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      TAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAA 720
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      ACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCT 780
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      AACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNG 840
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      NGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACC 900
consensus_4450#1      ------------------------------------------------------------
                                                                                  

consensus_4450#0      CCGGAAAAACCCGNAAANCA 920
consensus_4450#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)