These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 920 fasta sequence [TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGGCAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCGGAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAGGCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAACTATTAATTTTCTTTTATCTTAA-TAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGCTACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGACTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANTCTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTCTAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAAACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCTAACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNGNGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACCCCGGAAAAACCCGNAAANCA] [+] EMBL BX609763 [TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGGCAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCGGAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAGGCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAACTATTAATTTTCTTTTATCTTAA TAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTG ] [+] EMBL AL931070 [ ccgaggnGGAAAAGACAGACTTTGATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGTTACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCTCGGGTTTACTTGTATAAACGAACTATT ATTTTCTTTTATCTTAATTAAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTTTAACGCTACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGACTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANTCTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTCTAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAAACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCTAACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNGNGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACCCCGGAAAAACCCGNAAANCA] consensusID : consensus_4450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTTTTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA] [+] EMBL BX626405 [GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAACTATTATTTTCTTTTATCTTAATAAAAAAAGTACGAACTTTCGTCCGAGAGCAAAATGAAAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTGTGTNTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4450#0 TATCGTACACTTATATGTTTGTTTGTTTTTGTATAAGTAATAGAAGCAAACTGGCTAAGG 60 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 CAATGCACATCACTTCAATGTATGGCGCCGCAAAGGGAGAGAAAACAGGATATGCACGCG 120 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 GAACGCGCATAACTAGCATGTACAACATGCCAATAGGAACACATTTAAGATCAGCATTAG 180 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 GCAGTGCTGTGGAAGTACACACCGGTTCTCATTTACTGGAAGAAGGAAAAGACAGACTTT 240 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 GATGGCATATTTTTCTACCACTGTAATACGACTACTACCACAAGCGTAATCGAACATTGT 300 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 TACCAAGCGCGCGGAAAGGTGGGATTATGAATCCGCACCGGTTTTCTTGTATAAACGAAC 360 consensus_4450#1 ------------GGACAGGTGGGATTATGAATCCNCACCGGTTTTCTTGTATAAACNAAC 48 *** ****************** ********************* *** consensus_4450#0 TATTAATTTTCTTTTATCTTAATAAAAAAAAGTACGAACTTTCGCCCGAGAGCAAAATGA 420 consensus_4450#1 TATTA-TTTTCTTTTATCTTAATAAAAAAA-GTACGAACTTTCGTCCGAGAGCAAAATGA 106 ***** ************************ ************* *************** consensus_4450#0 AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTTTGTGTTTAACGC 480 consensus_4450#1 AAAGCAATGGTAAAGACTGCAACCCTCCAACAAACGTGTGTGTGTGTGTGTGTGTTTGTG 166 *********************************************** ***** * consensus_4450#0 TACTCGGCAGTATATAGGGTTTTCCAACAGGGTTCTCATAGTTGTGGGACTCTTCCTTGA 540 consensus_4450#1 TGTNTAA----------------------------------------------------- 173 * consensus_4450#0 CTCTTTCCTATAGGAAGTGAACTACATATGATGGAAATTGGCCTCTACGGTACCGTCANT 600 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 CTGGACAGGCTGCTTGNGAGATTCCGATTGGCATTCGTCCAGCAAGGGTGCTACAGAGTC 660 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 TAATTCACGAACAGAAACGAGTCAATAAAGTGTCACACAGCCTATGAGAACTCCCGGAAA 720 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 ACCCTGTAACGTCGGCATCAGGCCACGTGGACGAACCATGCGCCACGTGTGCCNACACCT 780 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 AACGTTGCAAACGCTATGAAGAGATGACANCACACANANATACCTTACCAACAACAGGNG 840 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 NGAAAAANACACAAACAAAACCAAATGAAAAACAAAGCTAACNAACGCCTGNCGGGAACC 900 consensus_4450#1 ------------------------------------------------------------ consensus_4450#0 CCGGAAAAACCCGNAAANCA 920 consensus_4450#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||