cluster # 4458

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Anopheles gambiae
cluster # 4458 cluster # 4458 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4458#0 length = 686 sequences # 2

consensus_4458#1 length = 670 sequences # 1

consensusID : consensus_4458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 686
fasta sequence

                              [CCGGCTGCTGGTTGGAATGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACGTTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCCCGCAACACCACTGTGCGCCGCGTTTTCCGTACGCGTAAATGAACAAACCACGCCGCCGTATGCAAAACCAATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGTTCACATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGCAACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCGTTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGCAGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTG-TTATGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTAGGCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCAAGTGCTGTACGGTGCCTACATGGGGCCTCGGAAGTGGCCTACTACACGTACATCTACGCCAAGATTAGCCGGGAAAAGTATCAACA]

[+] EMBL BM576131             [CCGGCTGCTGGTTGGAATGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACGTTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCCCGCAACACCACTGTGCGCCGCGTTTTCCGTACGCGTAAATGAACAAACCACGCCGCCGTATGCAAAACCAATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGTTCACATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGCAACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCGTTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGCAGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTG TTATGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTAGGCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCAAGTGCTGTACGGTGCCTACATGGGGCCTCGGAAGTGGCCTACTACACGTACATCTACGCCAAGATTA                   ]
[+] EMBL BM631314             [   ccgGCTGGTTGGAATGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACGTTCCGACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCCCGCTCCACCACTGTGCGTCGCGTTTT CGTACGCGTAAATAAACAAACCACGCCACCGTATGCAAAACCGATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGTACACATTCCGACCCGAAACGCTGGGCTGGCAGGTGGTGAGTTTATCGCCGTGCCGCGAGGATGCAACCATGGTTGCGGGTGTCGTTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCGTTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGCAGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTTTATGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTAGGCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCAAGTGCTGTACGGTGCCTACAT  GGCCTCGGAAGTGGCCTACTACACGTACATCTACGCCAAGATTAGCCGGGAAAAGTATCAACA]




>consensus_4458#0
CCGGCTGCTGGTTGGAATGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACG
TTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCC
CGCAACACCACTGTGCGCCGCGTTTTCCGTACGCGTAAATGAACAAACCACGCCGCCGTA
TGCAAAACCAATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGTTCAC
ATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGC
AACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCG
TTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGC
AGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTTAT
GTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTAGG
CATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCA
AGTGCTGTACGGTGCCTACATGGGGCCTCGGAAGTGGCCTACTACACGTACATCTACGCC
AAGATTAGCCGGGAAAAGTATCAACA

consensusID : consensus_4458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CCGCCCACGCGTCCGGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACGTTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCCCGCTCCACCACTGTGCGCCGCGTTTTCGTACGCGTAAATGAACAAAGCACGCCGCCGTATGCAAAACCGATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGATCACATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGCAACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCGTTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGCAGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTTTATGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTGGGCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCAAGTGCTGTACGGTGCCTACATGGCCTCGGAAGTGGCCTACTACACGTACATCTACGCCAAGATTAGCCGGGGA]

[+] EMBL BM594740             [CCGCCCACGCGTCCGGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACGTTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCCCGCTCCACCACTGTGCGCCGCGTTTTCGTACGCGTAAATGAACAAAGCACGCCGCCGTATGCAAAACCGATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGATCACATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGCAACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCGTTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGCAGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTTTATGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTGGGCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCAAGTGCTGTACGGTGCCTACATGGCCTCGGAAGTGGCCTACTACACGTACATCTACGCCAAGATTAGCCGGGGA]




>consensus_4458#1
CCGCCCACGCGTCCGGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACGTTC
CTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCCCGC
TCCACCACTGTGCGCCGCGTTTTCGTACGCGTAAATGAACAAAGCACGCCGCCGTATGCA
AAACCGATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGATCACATTC
CGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGCAACC
ATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCGTTTC
CGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGCAGCT
GAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTTTATGTT
TCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTGGGCAT
CGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGCAAGT
GCTGTACGGTGCCTACATGGCCTCGGAAGTGGCCTACTACACGTACATCTACGCCAAGAT
TAGCCGGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4458#0      CCGGCTGCTGGTTGGAATGTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACG 60
consensus_4458#1      CCGCCCACGCGTCCG---GTAGCCACTTCTAGTGTCAGTGTCTGTGCGGGAAAACGAACG 57
                      *** *  *  **  *   ******************************************

consensus_4458#0      TTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCC 120
consensus_4458#1      TTCCTACCGCGTCCGAGCAAAGCCGACCATGTGCCATTTATTTTCCACGCGCTAACATCC 117
                      ************************************************************

consensus_4458#0      CGCAACACCACTGTGCGCCGCGTTTTCCGTACGCGTAAATGAACAAACCACGCCGCCGTA 180
consensus_4458#1      CGCTCCACCACTGTGCGCCGCGTTTTC-GTACGCGTAAATGAACAAAGCACGCCGCCGTA 176
                      ***  ********************** ******************* ************

consensus_4458#0      TGCAAAACCAATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGTTCAC 240
consensus_4458#1      TGCAAAACCGATTCGCATCCACACCGTGAAGGTTAGCAATCATTCTCGTGGGGTGATCAC 236
                      ********* ********************************************* ****

consensus_4458#0      ATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGC 300
consensus_4458#1      ATTCCGACCCGAAACGCTGGGCTGGCGCGTGGTGAGTTTATCACCGTGCCGCGAGGATGC 296
                      ************************************************************

consensus_4458#0      AACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCG 360
consensus_4458#1      AACCATGGCTGCGGGTGTCGCTGCTGCTGTGCGTCTTCGGGTTCTTCCGGGAGCTGCGCG 356
                      ************************************************************

consensus_4458#0      TTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGC 420
consensus_4458#1      TTTCCGAACCGTTCGTCACCGAGTTCCTGTCGGGCGAGTGGCGGGACATCGAGCCGGAGC 416
                      ************************************************************

consensus_4458#0      AGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTT-A 479
consensus_4458#1      AGCTGAACCGCGACGTCTACCCGATCGGCACGTACAGCCAGGTCGCGCTGCTCGTGTTTA 476
                      ********************************************************** *

consensus_4458#0      TGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTAG 539
consensus_4458#1      TGTTTCTGCTCACGGATGTCCTCAGATACAAATCGATAATTGTGTTTTCCGCCTGCTTGG 536
                      ********************************************************** *

consensus_4458#0      GCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGC 599
consensus_4458#1      GCATCGTCATCTGGTCGCTGCTGCTGTGGACGGAATCGTTAGCCGCACTGCAGGTCGTGC 596
                      ************************************************************

consensus_4458#0      AAGTGCTGTACGGTGCCTACATGGGGCCTCGGAAGTGGCCTACTACACGTACATCTACGC 659
consensus_4458#1      AAGTGCTGTACGGTGCCTACATGG--CCTCGGAAGTGGCCTACTACACGTACATCTACGC 654
                      ************************  **********************************

consensus_4458#0      CAAGATTAGCCGGGAAAAGTATCAACA 686
consensus_4458#1      CAAGATTAGCCGGGGA----------- 670
                      ************** *