These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 939 fasta sequence [CTGCATCCTGAGGTGCATCCCATGCCAACTGCCCGGAAGCGTACGCGGACGTAAGCAAAAAGGTGGCCAAGTACACGTTCCTTGCGTTTGTGCTCGCGTCCTTCGTTGGCTGCGGCACGCAGATCTACCAGAAGGCGAGCTACATCCATCTGTTCGTGCTGAGCTACCCGCTGGTACTGTACCTGATGATATTCGGCCTCAATCTGGAGCANTTTCTGCGCACGATCGTCGACACCGAGCCGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGACCGAGATCGACGCACTGCGGACGGACTTTAACGCACGCTGCAAGCAGATCGTCTTTACCTCGCTGCTGAACGCGTACTACGCCGGCTTCGTGCCGTGCGTGCTGGCCTCGAAGCATCTGTACTACAACAACTTCTGGACCACGCAGCATCTGGCGTGCGTGTTTGTCGGCGGGCTGACCATGTGCGTCACGTACTGCTTCCCGATGCGATACTGTGACGTGTTTCACCGGGCCGCGCTACACCTCGGCCAGTGGCAGCGGGTTAGCAATCGGTCGAACAGCGTGCCGACGTACACGTGGTCGAAGACGAACATCTACCCGCACGGGACGTACGTGCGGCACATGGGCGAGGTGTACCGGTCGGTGGGCTACTGCACATCGGCCGTACCGGCCAACACTAGCCATTATAGATTTTACGCCATTTTCAGCAACCATATCGTGATCTATCTGACACTGTTCGCTGTGCAGATGCTGCTGATAGTGCTGCAGCTGGCCATATTTGCGCTCACCCCGGAGTGGCAAAACGTGCTCTCGGTGGCGTTTCTGTTGCTGATCAACTTTTTCACCCTGNTTCGGATCGCCCGGGACTACTTTATCGCCCGCCGGATATACGCCAACGAGCCGCTGTACCTCGGCATGC] [+] EMBL BX628852 [CTGCATCCTGAGGTGCATCCCATGCCAACTGCCCGGAAGCGTACGCGGACGTAAGCAAAAAGGTGGCCAAGTACACGTTCCTTGCGTTTGTGCTCGCGTCCTTCGTTGGCTGCGGCACGCAGATCTACCAGAAGGCGAGCTACATCCATCTGTTCGTGCTGAGCTACCCGCTGGTACTGTACCTGATGATATTCGGCCTCAATCTGGAGCANTTTCTGCGCACGATCGTCGACACCGAGCCGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGAC ] [+] EMBL BX621838 [ CATCTGTTCGTGCTGAGCTACCCGCTGGTACTGTACCTGATGATATTCGGCCTCAATCTGGAGCAGTTTCTGCGCACGATCGTCGACACCGAGCCGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGACCGAGATCGACGCACTGCGGACGGACTTTAACGCACGCTGCAAGCAGATCGTCTTTACCTCGCTGCTGAACGCGTACTACGCCGGCTTCGTGCCGTGCGTGCTGGCCTCGAAGCATCTGTACTACAACAACTTCTGGACCACGCAGCATCTGGCGTGCGTGTTTGTCGGCGGGCTGACCATGTGCGTCACGTACTGCTTCCCGATGCGATACTGTGACGTGTTTCACCGGGCCGCGCTACACCTCGGCCAGTGGCAGCGGGTTAGCAATCGGTCGAACAGCGTGCCGACGTACACGTGGTCGAAGACGAACATCTACCCGCACGGGACGTACGTGCGGCACATGGGCGAGGTGTACCGGTCGGTGGGCTACTGCACATCGGCCGTACCGGCCAACACTAGCCATTATAGATTTTACGCCATTTTCAGCAACCATATCGTGATCTATCTGACACTGTTCGCTGTGCAGATGCTGCTGATAGTGCTGCAGCTGGCCATATTTGCGCTCACCCCGGAGTGGCAAAACGTGCTCTCGGTGGCGTTTCTGTTGCTGATCAACTTTTTCACCCTGNTTCGGATCGCCCGGGACTACTTTATCGCCCGCCGGATATACGCCAACGAGCCGCTGTACCTCGGCATGC] consensusID : consensus_4464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCGGACGCGTGGGTGCGGCACACAGATCTACCAGAAGGCGAGCTACATCCATCTGTTCGTGCTGAGCTACCCGCTGGTACTGTACCTGATGATATTCGGCCTCAATCTGGAGCAGTTTCTGCGCACGATCGTCGACACCGAGCCGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGACCGAGATCGACGCACTGCGGACGGACTTTAACGCACGCTGCAAGCAGATCGTCTTTACCTCGCTGCTGAACGCGTACTACGCCGGCTTCGTGCCGTGCGTGCTGGCCTCGAAGCATCTGTACTACAACAACTTCTGGACCACGCAGCATCTGGCGTGCGTGTTTATCGGCGGGCTGACCATGTGCGTCACGTACTGCTTCCCGATGCGGTACTGTGACGTGTTTCACCGGGCCGCACTGCACCTCGGCCAGTGGCAGCGGGTTAGCAATCGGTCGAACAGCGTGCCGACGTACACGTGGTCGAAGACGAACATCTACCCGCACGGGACGTACGTGCGGCACATGGGCGAGGTGTACCGGTCGGTGGGCTACTGCACATCGGCCGTACCGGCCAACACTAGCCATTATAGATTTTACGCCATTTTCAGCAACCATATCGTGATCTATCTGACACTGTTCGCTGT] [+] EMBL BM644226 [CCGCGGACGCGTGGGTGCGGCACACAGATCTACCAGAAGGCGAGCTACATCCATCTGTTCGTGCTGAGCTACCCGCTGGTACTGTACCTGATGATATTCGGCCTCAATCTGGAGCAGTTTCTGCGCACGATCGTCGACACCGAGCCGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGACCGAGATCGACGCACTGCGGACGGACTTTAACGCACGCTGCAAGCAGATCGTCTTTACCTCGCTGCTGAACGCGTACTACGCCGGCTTCGTGCCGTGCGTGCTGGCCTCGAAGCATCTGTACTACAACAACTTCTGGACCACGCAGCATCTGGCGTGCGTGTTTATCGGCGGGCTGACCATGTGCGTCACGTACTGCTTCCCGATGCGGTACTGTGACGTGTTTCACCGGGCCGCACTGCACCTCGGCCAGTGGCAGCGGGTTAGCAATCGGTCGAACAGCGTGCCGACGTACACGTGGTCGAAGACGAACATCTACCCGCACGGGACGTACGTGCGGCACATGGGCGAGGTGTACCGGTCGGTGGGCTACTGCACATCGGCCGTACCGGCCAACACTAGCCATTATAGATTTTACGCCATTTTCAGCAACCATATCGTGATCTATCTGACACTGTTCGCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4464#0 CTGCATCCTGAGGTGCATCCCATGCCAACTGCCCGGAAGCGTACGCGGACGTAAGCAAAA 60 consensus_4464#1 ------------------------------------------------------------ consensus_4464#0 AGGTGGCCAAGTACACGTTCCTTGCGTTTGTGCTCGCGTCCTTCGTTGGCTGCGGCACGC 120 consensus_4464#1 ---------------------------------CCGCGGACGC--GTGGGTGCGGCACAC 25 **** * *** ******** * consensus_4464#0 AGATCTACCAGAAGGCGAGCTACATCCATCTGTTCGTGCTGAGCTACCCGCTGGTACTGT 180 consensus_4464#1 AGATCTACCAGAAGGCGAGCTACATCCATCTGTTCGTGCTGAGCTACCCGCTGGTACTGT 85 ************************************************************ consensus_4464#0 ACCTGATGATATTCGGCCTCAATCTGGAGCANTTTCTGCGCACGATCGTCGACACCGAGC 240 consensus_4464#1 ACCTGATGATATTCGGCCTCAATCTGGAGCAGTTTCTGCGCACGATCGTCGACACCGAGC 145 ******************************* **************************** consensus_4464#0 CGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGA 300 consensus_4464#1 CGAACTGCATCAACGGGATGCCGCTGCACAGCTGCTCCTCCAGTGCGGGCGCCATCCGGA 205 ************************************************************ consensus_4464#0 CCGAGATCGACGCACTGCGGACGGACTTTAACGCACGCTGCAAGCAGATCGTCTTTACCT 360 consensus_4464#1 CCGAGATCGACGCACTGCGGACGGACTTTAACGCACGCTGCAAGCAGATCGTCTTTACCT 265 ************************************************************ consensus_4464#0 CGCTGCTGAACGCGTACTACGCCGGCTTCGTGCCGTGCGTGCTGGCCTCGAAGCATCTGT 420 consensus_4464#1 CGCTGCTGAACGCGTACTACGCCGGCTTCGTGCCGTGCGTGCTGGCCTCGAAGCATCTGT 325 ************************************************************ consensus_4464#0 ACTACAACAACTTCTGGACCACGCAGCATCTGGCGTGCGTGTTTGTCGGCGGGCTGACCA 480 consensus_4464#1 ACTACAACAACTTCTGGACCACGCAGCATCTGGCGTGCGTGTTTATCGGCGGGCTGACCA 385 ******************************************** *************** consensus_4464#0 TGTGCGTCACGTACTGCTTCCCGATGCGATACTGTGACGTGTTTCACCGGGCCGCGCTAC 540 consensus_4464#1 TGTGCGTCACGTACTGCTTCCCGATGCGGTACTGTGACGTGTTTCACCGGGCCGCACTGC 445 **************************** ************************** ** * consensus_4464#0 ACCTCGGCCAGTGGCAGCGGGTTAGCAATCGGTCGAACAGCGTGCCGACGTACACGTGGT 600 consensus_4464#1 ACCTCGGCCAGTGGCAGCGGGTTAGCAATCGGTCGAACAGCGTGCCGACGTACACGTGGT 505 ************************************************************ consensus_4464#0 CGAAGACGAACATCTACCCGCACGGGACGTACGTGCGGCACATGGGCGAGGTGTACCGGT 660 consensus_4464#1 CGAAGACGAACATCTACCCGCACGGGACGTACGTGCGGCACATGGGCGAGGTGTACCGGT 565 ************************************************************ consensus_4464#0 CGGTGGGCTACTGCACATCGGCCGTACCGGCCAACACTAGCCATTATAGATTTTACGCCA 720 consensus_4464#1 CGGTGGGCTACTGCACATCGGCCGTACCGGCCAACACTAGCCATTATAGATTTTACGCCA 625 ************************************************************ consensus_4464#0 TTTTCAGCAACCATATCGTGATCTATCTGACACTGTTCGCTGTGCAGATGCTGCTGATAG 780 consensus_4464#1 TTTTCAGCAACCATATCGTGATCTATCTGACACTGTTCGCTGT----------------- 668 ******************************************* consensus_4464#0 TGCTGCAGCTGGCCATATTTGCGCTCACCCCGGAGTGGCAAAACGTGCTCTCGGTGGCGT 840 consensus_4464#1 ------------------------------------------------------------ consensus_4464#0 TTCTGTTGCTGATCAACTTTTTCACCCTGNTTCGGATCGCCCGGGACTACTTTATCGCCC 900 consensus_4464#1 ------------------------------------------------------------ consensus_4464#0 GCCGGATATACGCCAACGAGCCGCTGTACCTCGGCATGC 939 consensus_4464#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||