cluster # 4465

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Anopheles gambiae
cluster # 4465 cluster # 4465 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4465#0 length = 798 sequences # 1

consensus_4465#1 length = 521 sequences # 2

consensusID : consensus_4465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 798
fasta sequence

                              [AGAAGAGAAATAATGTTTAAAAAATAATAAAAGCATGGCAGAGATGGATTTTCAATTCAAATACGAGTGTTTGTGCACGAGCCCCAAAAGCATAAGAGTTGACGATGCTCTCCCAATGCATCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACATTACCATCCCCGACCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGGTACAACTATTAAAACCGTTTGTGCCAGCGTTCCACGATGATATTTCGTTGTGCAACTTCTTCATGCGTGCCTGGAAACAGGCCGTTCGGTTTTATTGTCCTAGATTGGTGGGCGAACTGGCGCAAGTCTACCCACAGTTTCTCGAGCCACTCGTAGACGCACTAATGAAAGTACAGGACGCCGATTACGGGTCGCTGCAGCTGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTTACGATAGGCGAATCCTTCTATGCCATACTGTCATATCTCGCCAAGCAAGACCGCGTTCGTGCCCAGCCCCTGATTAGCGCTTGCATTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAGTACTACGCACTATTCCCGCCGGCAANTANACCCCTACGCCATCGTAATGAACGAGATTATCNATNCCAACGATACCGACGTGGAAATGCTAATCGGTCAGTTA]

[+] EMBL BX621799             [AGAAGAGAAATAATGTTTAAAAAATAATAAAAGCATGGCAGAGATGGATTTTCAATTCAAATACGAGTGTTTGTGCACGAGCCCCAAAAGCATAAGAGTTGACGATGCTCTCCCAATGCATCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACATTACCATCCCCGACCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGGTACAACTATTAAAACCGTTTGTGCCAGCGTTCCACGATGATATTTCGTTGTGCAACTTCTTCATGCGTGCCTGGAAACAGGCCGTTCGGTTTTATTGTCCTAGATTGGTGGGCGAACTGGCGCAAGTCTACCCACAGTTTCTCGAGCCACTCGTAGACGCACTAATGAAAGTACAGGACGCCGATTACGGGTCGCTGCAGCTGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTTACGATAGGCGAATCCTTCTATGCCATACTGTCATATCTCGCCAAGCAAGACCGCGTTCGTGCCCAGCCCCTGATTAGCGCTTGCATTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAGTACTACGCACTATTCCCGCCGGCAANTANACCCCTACGCCATCGTAATGAACGAGATTATCNATNCCAACGATACCGACGTGGAAATGCTAATCGGTCAGTTA]




>consensus_4465#0
AGAAGAGAAATAATGTTTAAAAAATAATAAAAGCATGGCAGAGATGGATTTTCAATTCAA
ATACGAGTGTTTGTGCACGAGCCCCAAAAGCATAAGAGTTGACGATGCTCTCCCAATGCA
TCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACATTACCATCCCCGACCGTGAAA
AAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGCCGCCTTCCGGATGTAGTTGCG
CTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGGACGCAGGTTTGGCGGAAGTGA
ACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGGTACAACTATTAAAACCGTTTG
TGCCAGCGTTCCACGATGATATTTCGTTGTGCAACTTCTTCATGCGTGCCTGGAAACAGG
CCGTTCGGTTTTATTGTCCTAGATTGGTGGGCGAACTGGCGCAAGTCTACCCACAGTTTC
TCGAGCCACTCGTAGACGCACTAATGAAAGTACAGGACGCCGATTACGGGTCGCTGCAGC
TGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTTACGATAGGCGAATCCTTCTATGCCA
TACTGTCATATCTCGCCAAGCAAGACCGCGTTCGTGCCCAGCCCCTGATTAGCGCTTGCA
TTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAGTACTACGCACTATTCCCGCCGGCAA
NTANACCCCTACGCCATCGTAATGAACGAGATTATCNATNCCAACGATACCGACGTGGAA
ATGCTAATCGGTCAGTTA

consensusID : consensus_4465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 521
fasta sequence

                              [AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCCCAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACGCATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTTGACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACATTACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAGTACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGTTCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG]

[+] EMBL BX469247             [AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCCCAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACGCATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTTGACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACATTACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAGTACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGTTCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG]
[+] EMBL BX603837             [            GGCGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCCCAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACGCATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTTGACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACATTACC                                                                                                                                                                                                                                                                                     ]




>consensus_4465#1
AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCC
CAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACG
CATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTT
GACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACAT
TACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGC
CGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGG
ACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAG
TACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGT
TCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4465#0      ------------------------------------------------------------
consensus_4465#1      AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCC 60
                                                                                  

consensus_4465#0      -------AGAAGAGA-AATAATGTTTAAAAAAT--AATAAAAGCATGGCAGAGATGGATT 50
consensus_4465#1      CAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACG 120
                             * *****  **  ** ** * ** *   * **  * *   * * * * * *  

consensus_4465#0      TTCAATTCAAATA--CGAGTGTTTGTGC------ACGAGCCCCAAAAGCATA--AGAGTT 100
consensus_4465#1      CATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTT 180
                          * * ****   ***  * * ***       ***   ****  * * *     ****

consensus_4465#0      GACGATGCTCTCCCAATGCATCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACAT 160
consensus_4465#1      GACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACAT 240
                      *** *********** ********************************* **********

consensus_4465#0      TACCATCCCCGA-CCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGC 219
consensus_4465#1      TACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGC 300
                      ************ ***************************************** *****

consensus_4465#0      CGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGG 279
consensus_4465#1      CGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGG 360
                      ************************************************** *********

consensus_4465#0      ACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGG 339
consensus_4465#1      ACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAG 420
                      *********************************************** ********** *

consensus_4465#0      TACAACTAT-TAAAACCGTTTGTGCCAGCGTTCCACGATGATATTT-CGTTGTGCAAC-T 396
consensus_4465#1      TACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGT 480
                      ********* **************************** *** *** * ********* *

consensus_4465#0      TCTTCATGCGTGCCTGGAAACAGGCCGTT-CGGTTTTATTGTCCTAGATTGGTGGGCGAA 455
consensus_4465#1      TCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG------------------- 521
                      ****************************  ***********                   

consensus_4465#0      CTGGCGCAAGTCTACCCACAGTTTCTCGAGCCACTCGTAGACGCACTAATGAAAGTACAG 515
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      GACGCCGATTACGGGTCGCTGCAGCTGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTT 575
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      ACGATAGGCGAATCCTTCTATGCCATACTGTCATATCTCGCCAAGCAAGACCGCGTTCGT 635
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      GCCCAGCCCCTGATTAGCGCTTGCATTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAG 695
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      TACTACGCACTATTCCCGCCGGCAANTANACCCCTACGCCATCGTAATGAACGAGATTAT 755
consensus_4465#1      ------------------------------------------------------------
                                                                                  

consensus_4465#0      CNATNCCAACGATACCGACGTGGAAATGCTAATCGGTCAGTTA 798
consensus_4465#1      -------------------------------------------