These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 780 fasta sequence [ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAATTAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAATGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTGTTGCATTTACTGGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAACAATTGTAATACATGTCAGGTCG] [+] EMBL BX613309 [ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAATTAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAATGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTGTTGCATTTACTGGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAACAATTGTAATACATGTCAGGTCG] consensusID : consensus_4470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTGAATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAGTAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATTTAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATCGCTACGCGTAGAGCATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGATGGTAAGAGCAATGGGCTTGGCCAATGGTGGACAAGTTGCCCAGTTNTGAAGCGAAGGAGGCTTTGCANNAAGTTGTGCTCGCAAGCGTTNCGNAACGATNGGGTTGANCGTGATCGGNAANAAGGGTGGCATCAGNGCAN] [+] EMBL BX469324 [AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTGAATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCAGTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAGTAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATTTAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATCGCTACGCGTAGAGCATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGATGGTAAGAGCAATGGGCTTGGCCAATGGTGGACAAGTTGCCCAGTTNTGAAGCGAAGGAGGCTTTGCANNAAGTTGTGCTCGCAAGCGTTNCGNAACGATNGGGTTGANCGTGATCGGNAANAAGGGTGGCATCAGNGCAN] consensusID : consensus_4470#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCCCACGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAAATAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGTGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTG] [+] EMBL BM644248 [CCGCCCACGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAACATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCACGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAGGCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGATTTGGTTGATGTTTTGAAGCTAGGTTCAATTCCAATGGATGCATTTTCAAGCCAAATAATGATTAATAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGTGTGCAGATAGATGATGATTTAAAGTGTGTAGCAAACGATTATTTAAACGCAATTCCGATGGTTCATGAGGAAGTTGCCGATGCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGCTGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGCTTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTACAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCAAAAGCGCGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4470#0 ------------------------------------------------------------ consensus_4470#2 ------------------------------------------------------------ consensus_4470#1 AATCGGCACGAGGTGATAATAATGGTCGGCATGTTTCTAANAACAAACGTTATGACAGTG 60 consensus_4470#0 ----------ATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCA 50 consensus_4470#2 ----------------------------------------------------------CC 2 consensus_4470#1 AATGTGGCAAATGTAAAAGCTCACCGTCGTTTCGTGGATGTTAAGCTTAACGACACTCCA 120 * consensus_4470#0 GTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA 110 consensus_4470#2 GCCCA-CGCGTCCGGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA 61 consensus_4470#1 GTCCGTCTCCAATTGGACACAGCCTCTGATATAACTATTATAAATCGAGAGACATGGCAA 180 * ** * * ********************************************** consensus_4470#0 CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGATCA 170 consensus_4470#2 CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCA 121 consensus_4470#1 CATATTGGAAGTCCTAGTTTGGCACCATCGTCAGTTCTAACGAAAAATGCTTCAGGGTCA 240 ******************************************************** *** consensus_4470#0 CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG 230 consensus_4470#2 CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG 181 consensus_4470#1 CGGTTGGCAATTGATGGTGAATTTGTGTGTACCGTGAGCTTAGGTGAACATACAGCGCAG 300 ************************************************************ consensus_4470#0 GCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGTGCAGA-TTTGGTTGATGT 289 consensus_4470#2 GCGACAATACGGGTTACAGAAATTAACCTGATGCTTCTTGGCGCAGA-TTTGGTTGATGT 240 consensus_4470#1 GCGACAATACGGGTTACAGAAATTAATCTGATGCTTCTTGGCGCAGAGTTTGGTTGATGT 360 ************************** ************** ***** ************ consensus_4470#0 TTTGAAGCTAGGTTCAATTCCAATGGATGCATTT-TCAAGCCAATTAAT----GATTAA- 343 consensus_4470#2 TTTGAAGCTAGGTTCAATTCCAATGGATGCATTT-TCAAGCCAAATAAT----GATTAA- 294 consensus_4470#1 TTTGAAGCTAGGTTCAATTCCAATGGATGCATTTGTCAAGGCCAANAGTAAGTGATTAAG 420 ********************************** ***** * * * * ****** consensus_4470#0 TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAA-TGTGCAGATAGATGATGATT 402 consensus_4470#2 TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAG-TGTGCAGATAGATGATGATT 353 consensus_4470#1 TAACCATAAATATCCTGATATAGAAGGTATGATCGCCAGGTGTGCAGATGAGTGATGATT 480 ************************************** ********* ******** consensus_4470#0 TAAAGTGTGTAG-CAAACGATTATTT--AAACGCAATTCCGATGGTTCATGAGGAAGTTG 459 consensus_4470#2 TAAAGTGTGTAG-CAAACGATTATTT--AAACGCAATTCCGATGGTTCATGAGGAAGTTG 410 consensus_4470#1 TAAAGTGTGTAGGCAAACGATTAGTTTAAAACGCAATTCCGATGGTTCATGAGGAAGTTG 540 ************ ********** ** ******************************** consensus_4470#0 CCGAT-GCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGC 518 consensus_4470#2 CCGAT-GCTACGCGTAGAGATATAATACTTAGCAGATTATACGATTATGTAAAGAATGGC 469 consensus_4470#1 CCGATCGCTACGCGTAGAG-CATATCAAGTAACTTTAGGCANGATTGATCACGGAGTNGA 599 ***** ************* *** * ** * * **** * ** * * consensus_4470#0 TGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGC 578 consensus_4470#2 TGGCCATGTGAAATTCCATTTAACGAAGAGCTTGAAAGTTTTTGCAACGTTAAAGATGGC 529 consensus_4470#1 TGGTAAGAGCAA--TGGGCTTGGCCAATGG-TGGACAAGTTGCCCAGTTNTGAAGC---- 652 *** * ** * ** * ** * * ** * ** ** * *** consensus_4470#0 TTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTA 638 consensus_4470#2 TTAACTATAGAAAAAGGGTGCATAATATTTGGAGCGAGGGTAGTAATACCAAATGCACTA 589 consensus_4470#1 ---------GAAGGAGGCTTTGCANNAAGTTGTGCTCGCA-AGCGTTNCGNAACG----A 698 *** *** * * * * * ** * ** * * ** * * consensus_4470#0 CAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCA 698 consensus_4470#2 CAGAAGCGATGCCTTGACCAGCTGCATAAGGGTCATCCAGGCATAGTTAATATGAAAGCA 649 consensus_4470#1 TNGGGTTGAN--CGTGATCGGNAANAAGGGTGGCATCAGNGCAN---------------- 740 * ** * *** * * * * * **** *** consensus_4470#0 AAAGCGCGTTGTTGCATTTACTGGCCATTAATAGAAACAGACATAGTTAAGGTGGTTAAC 758 consensus_4470#2 AAAGCGCGTTG------------------------------------------------- 660 consensus_4470#1 ------------------------------------------------------------ consensus_4470#0 AATTGTAATACATGTCAGGTCG 780 consensus_4470#2 ---------------------- consensus_4470#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||