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Anopheles gambiae
cluster # 4472 cluster # 4472       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4472#0 length = 984 sequences # 2  
consensus_4472#1 length = 555 sequences # 1  

consensusID : consensus_4472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 984
fasta sequence
                              [AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTCCGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGTGGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAAAGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCATTNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAAAGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATGCCACCTGTNAACACATTCNTTGCT]

[+] EMBL BX467346             [AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTCCGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGTGGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAAAGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCATTNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAAAGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATGCCACCTGTNAACACATTCNTTGCT]
[+] EMBL BX626681             [                        ATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTG TTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTA GCTACGCGC                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_4472#0 AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGG TTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGC CCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTG GCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC ACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGAT ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT ACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTC CGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGT GGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAA AGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCAT TNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAA AGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATG CCACCTGTNAACACATTCNTTGCT



consensusID : consensus_4472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATCTTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCTGTCAACAAGCGCACT]

[+] EMBL BX628367             [AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATCTTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCTGTCAACAAGCGCACT]


>consensus_4472#1 AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTC TGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGC GGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTT GAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCAC TCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGA TAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGC TACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACA CACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATC TTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCT GTCAACAAGCGCACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4472#0      AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGG 60
consensus_4472#1      ------------------------------------------------------------
                                                                                  

consensus_4472#0      TTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGC 120
consensus_4472#1      ------------------------------------------------------------
                                                                                  

consensus_4472#0      CCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTG 180
consensus_4472#1      ------------------------------------------------------------
                                                                                  

consensus_4472#0      GCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC 240
consensus_4472#1      ----AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC 56
                          ********************************************************

consensus_4472#0      ACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT 300
consensus_4472#1      ACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT 116
                      ****************** *****************************************

consensus_4472#0      GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA 360
consensus_4472#1      GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA 176
                      ************************************************************

consensus_4472#0      GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT 420
consensus_4472#1      GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT 236
                      ************************************************************

consensus_4472#0      GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG 480
consensus_4472#1      GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG 296
                      ************************************************************

consensus_4472#0      TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGAT 540
consensus_4472#1      TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTT-GTGTTTTACTCGAT 355
                      ********************************************* **************

consensus_4472#0      ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT 600
consensus_4472#1      ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT 415
                      ************************************************************

consensus_4472#0      ACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTC 660
consensus_4472#1      ACACACACTCACTGTAG-CTACGCGCTGTGTCC--GAGCTCGG-TGTTAG-TAC--ATTC 468
                      ***************** ***************    ****** ****** ***   ***

consensus_4472#0      CGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGT 720
consensus_4472#1      CGTTAAATTATCTTCATTTGTTAG-TTGT-GTAGAAAC---GGCTCTG--CTACTTTGT- 520
                      ***************  **** ** **** *******    **  **   ********  

consensus_4472#0      GGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAA 780
consensus_4472#1      --GGGATA-GCTTTAAAACACC-TGTCAACAAGCGCACT--------------------- 555
                        ** *** ************* * *   *** *  *                       

consensus_4472#0      AGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCAT 840
consensus_4472#1      ------------------------------------------------------------
                                                                                  

consensus_4472#0      TNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAA 900
consensus_4472#1      ------------------------------------------------------------
                                                                                  

consensus_4472#0      AGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATG 960
consensus_4472#1      ------------------------------------------------------------
                                                                                  

consensus_4472#0      CCACCTGTNAACACATTCNTTGCT 984
consensus_4472#1      ------------------------
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)