These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence [AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTCCGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGTGGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAAAGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCATTNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAAAGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATGCCACCTGTNAACACATTCNTTGCT] [+] EMBL BX467346 [AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTCCGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGTGGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAAAGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCATTNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAAAGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATGCCACCTGTNAACACATTCNTTGCT] [+] EMBL BX626681 [ ATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGGTTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGCCCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTGGCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTG TTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTA GCTACGCGC ] consensusID : consensus_4472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATCTTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCTGTCAACAAGCGCACT] [+] EMBL BX628367 [AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGACACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGTGAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGAGTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGTGCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGGTTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTGTGTTTTACTCGATATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGTACACACACTCACTGTAGCTACGCGCTGTGTCCGAGCTCGGTGTTAGTACATTCCGTTAAATTATCTTCATTTGTTAGTTGTGTAGAAACGGCTCTGCTACTTTGTGGGATAGCTTTAAAACACCTGTCAACAAGCGCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4472#0 AGAATCGNGCACGAGGCGTTGGGCATTCGGCATTGTGCTGTGGGAGATTGCCACGTTAGG 60 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 TTGTACTCCTTACCCGAGCTTATCGGGCCGTGAGGTAGTCCGGAGTGTCCCGAATGGTGC 120 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 CCGCCCGGAGGTGCCCGCCGACTGCCGGCCGGAGCTGTACGATCTGATGCAGCGCACCTG 180 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 GCGAAAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC 240 consensus_4472#1 ----AAGGACCCAAGGCAGCGGCCCACGTTCAGTGAGGCACGAACGTGCCTCGCGAGGAC 56 ******************************************************** consensus_4472#0 ACTCTGCCAGTGGCAGCTCGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT 300 consensus_4472#1 ACTCTGCCAGTGGCAGCTGGAGGACAACGATACCTCCAACACGTCCGAATATCTGGACGT 116 ****************** ***************************************** consensus_4472#0 GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA 360 consensus_4472#1 GAGCGGGTTTAGCGAAGATCTGGAACAGGGCATGGTGTACTTCAACCGGCGAATATCCGA 176 ************************************************************ consensus_4472#0 GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT 420 consensus_4472#1 GTTTGAGTGTGAAATCTGATGGCAGCATAAACCTAGCGCACGTTTTCCTGGTGAAAATGT 236 ************************************************************ consensus_4472#0 GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG 480 consensus_4472#1 GCACTCCGTCGGGTTTTGTCTACCGCGTGGAGGAGGTTTTTATAGCAAACTCCAAGCCGG 296 ************************************************************ consensus_4472#0 TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTTTGTGTTTTACTCGAT 540 consensus_4472#1 TTGATAATTATCGGCAAACTTGTACATATCTAGGCTCTCTGTTTT-GTGTTTTACTCGAT 355 ********************************************* ************** consensus_4472#0 ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT 600 consensus_4472#1 ATAGCTACTACCCCATTCCTGTCCTTGCACCAAACCAATCATCTTCATCCAATTTTCAGT 415 ************************************************************ consensus_4472#0 ACACACACTCACTGTAGGCTACGCGCTGTGTCCCGAGGCTCGGGTGTTAGGTACCATTTC 660 consensus_4472#1 ACACACACTCACTGTAG-CTACGCGCTGTGTCC--GAGCTCGG-TGTTAG-TAC--ATTC 468 ***************** *************** ****** ****** *** *** consensus_4472#0 CGTTAAATTATCTTCCATTGTCAGGTTGTTGTAGAAANCGGGGTCCTAGCCTACTTTGGT 720 consensus_4472#1 CGTTAAATTATCTTCATTTGTTAG-TTGT-GTAGAAAC---GGCTCTG--CTACTTTGT- 520 *************** **** ** **** ******* ** ** ******** consensus_4472#0 GGGGAATAAGCTTTAAAACACCCTTTTTTCAAACCAAAAGCCGCCAACNTTGGATTTAAA 780 consensus_4472#1 --GGGATA-GCTTTAAAACACC-TGTCAACAAGCGCACT--------------------- 555 ** *** ************* * * *** * * consensus_4472#0 AGGCCCAAAGGNAAACCTTTTTAAATGGAGACCNACCACAATTAATNGACTTCTTTGCAT 840 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 TNNTATATTCCNNCACAACATTTTTGCACCAAAATTTGGCCAGAACGCACCATTTTCCAA 900 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 AGNCGTTACACGGGGAAANCCCCCTTNTCCACATTGTATATCCGCCAANACACTTTAATG 960 consensus_4472#1 ------------------------------------------------------------ consensus_4472#0 CCACCTGTNAACACATTCNTTGCT 984 consensus_4472#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||