These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence [TCACCGTGGGACCAACAATTCGTTCCAGATTAAAGCCTCGTCACCGCTGGCTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCATCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGTGGAGCCTTTTTGAATTTAGTCGAACCGGCCAGTGAAATGAGTTCCTGGCAGGCGGAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATCACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAGCAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAGAAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTTATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCTGATCGATGGTGTGCGGGAGAACAAGCAGCACTGGATCGAGCTGGCCCAAAGCGCGAAGGAGGCGTACGCAAACAACAATAACACGAGCGAAAACAATAATAACAACAAGAGCCCCTGCACGGACCATGCGGAGGACGACGGCCACCAGCAAGAATGGGGGTGGTGGAGTGCGTCCGCAGCCCGCTCGGATCACCAGCAAGTAGCCACGAGTCNGCCACCACTAACAGTAGTC] [+] EMBL BX625740 [TCACCGTGGGACCAACAATTCGTTCCAGATTAAAGCCTCGTCACCGCTGGCTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCATCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGTGGAGCCTTTTTGAATTTAGTCGAACCGGCCAGTGAAATGAGTTCCTGGCAGGCGGAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATCACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAGCAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAGAAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTTATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCTGATCGATGGTGTGCGGGAGAACAAGCAGCACTGGATCGAGCTGGCCCAAAGCGCGAAGGAGGCGTACGCAAACAACAATAACACGAGCGAAAACAATAATAACAACAAGAGCCCCTGCACGGACCATGCGGAGGACGACGGCCACCAGCAAGAATGGGGGTGGTGGAGTGCGTCCGCAGCCCGCTCGGATCACCAGCAAGTAGCCACGAGTCNGCCACCACTAACAGTAGTC] [+] EMBL BX621301 [TCACCGTGGGACCAACAATTCGTTCCAGATTAAAGCCTCGTCACCGCTGGCTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCATCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGTGGAGCCTTTTTGAATTTAGTCGAACCGGCCAGTGAAATGAGTTCCTGGCAGGCGGAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATCACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAGCAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAGAAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTTATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCT ] consensusID : consensus_4481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [CGCCAGGTTATCTGGATACGTGGGACACAATCGTTCAGATTAAGCTCGTCACGCTGGTCANCTCTACTCGACGTCACGATGGAGCAACATCACTTCGACAGTGTCTGATGATCATCAACAGCCCGGCAAACAGATACTTGTCAACATGTTCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGGCATCCTATTCAACGATCTGGCGNTTATTTCAGGAAACGTTGGAGCCTTTTTTGAATTTTAGTTNCGAACCGGGCCAGTGAAATGAGTTTCCTGGCCAGGCTGGGAGGGAAGCCCACTGCTCCGGCTTNGGCTTGCTGCCCGGCCGGAATTGGAAGGCCATTGGAACCCGGTTTCCTTGGGCAGGAACCCCTTGGTTTCCCCCTGGGGCCCCCAAAATTTTTCTCAAAAAACCCNAAAAAAGTGGGCGCCCCCGGGTGTGNGGGGGGGGGGCACAACAAAAAAAATTTATCTCCCCGCGCGGNGAAAAAAGGAAAACAAAAAAGTGGCTCCNC] [+] EMBL AL931096 [CGCCAGGTTATCTGGATACGTGGGACACAATCGTTCAGATTAAGCTCGTCACGCTGGTCANCTCTACTCGACGTCACGATGGAGCAACATCACTTCGACAGTGTCTGATGATCATCAACAGCCCGGCAAACAGATACTTGTCAACATGTTCTCGGAGGACTACAGCCGTGTGATACGCGTGCTGGAAGATGGCATCCTATTCAACGATCTGGCGNTTATTTCAGGAAACGTTGGAGCCTTTTTTGAATTTTAGTTNCGAACCGGGCCAGTGAAATGAGTTTCCTGGCCAGGCTGGGAGGGAAGCCCACTGCTCCGGCTTNGGCTTGCTGCCCGGCCGGAATTGGAAGGCCATTGGAACCCGGTTTCCTTGGGCAGGAACCCCTTGGTTTCCCCCTGGGGCCCCCAAAATTTTTCTCAAAAAACCCNAAAAAAGTGGGCGCCCCCGGGTGTGNGGGGGGGGGGCACAACAAAAAAAATTTATCTCCCCGCGCGGNGAAAAAAGGAAAACAAAAAAGTGGCTCCNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4481#0 -------TCACCGTGGGACCAACAATTCGTTC---CAGATTAAAGCCTCGTCACCGCTGG 50 consensus_4481#1 CGCCAGGTTATCTGGATACGTGGGACACAATCGTTCAGATTAAG--CTCGTCAC-GCTGG 57 * * * * ** * * ** ******** ******** ***** consensus_4481#0 CTCAGCTCTACTCGACGTCCACGATGGAGCACCATCACTTCGACCAGTGTCTGATGATCA 110 consensus_4481#1 -TCANCTCTACTCGACGTC-ACGATGGAGCAACATCACTTCGAC-AGTGTCTGATGATCA 114 *** ************** *********** ************ *************** consensus_4481#0 TCAACAGCCCCGGCAACCAGATACTGTCCAACATGTCCTCGGAGGACTACAGCCGTGTGA 170 consensus_4481#1 TCAACAGCCC-GGCAAACAGATACTTGTCAACATGTTCTCGGAGGACTACAGCCGTGTGA 173 ********** ***** ******** ******** *********************** consensus_4481#0 TACGCGTGCTGGAAGATGCCATCCTATCCACCGATCTGGCCGTTTATTTCAGGAAACGT- 229 consensus_4481#1 TACGCGTGCTGGAAGATGGCATCCTATTCAACGATCTGGC-GNTTATTTCAGGAAACGTT 232 ****************** ******** ** ********* * **************** consensus_4481#0 GGAGCCTTTTT-GAATTTAG---TCGAACCGG-CCAGTGAAATGAGTT-CCTGGCAGGCG 283 consensus_4481#1 GGAGCCTTTTTTGAATTTTAGTTNCGAACCGGGCCAGTGAAATGAGTTTCCTGGCCAGGC 292 *********** ****** ******** *************** ****** * consensus_4481#0 GAGGAGCCACGCTCGCTGCTGCGCGCGATGAGCATGACCGTCTGCGACCTGTCCGCCATC 343 consensus_4481#1 TGGGAGGGAAGCCCACTGCTCCG--------GCTTNG--GCTTGCTGCCCGGCCGGAATT 342 **** * ** * ***** ** ** * * *** ** * *** ** consensus_4481#0 ACCAAGCCGTGGGAAATCGAGAAGCGCGTCGCCGATCTGGTCAGCTCGGAGTTCTTTGAG 403 consensus_4481#1 GGAAGGCCATTGGAAC---------------CCGGTTTCCTTGGGCAGGAACCCCTTGGT 387 * *** * **** *** * * * * *** * *** consensus_4481#0 CAGGGCGATATGGAGCGGCAAGAGTTAAACATCACACCGATTGATATAATGAATCGAGAG 463 consensus_4481#1 TT---CCCCCTGGGGCCCCCAAAATT--------------TTTCTCAAAAAACCCNAAAA 430 * *** ** * * * ** ** * ** * * * * consensus_4481#0 AAGGAGGATCAATTGCCAATGATTAGGTTGGCTTTATTGATTCGATCTGTATTCCTATTT 523 consensus_4481#1 AAGTGGGCGCCCCCGGGTGTGNGGGGGGGGGGCACAACAAAAAAAATT-TATCTCCCCGC 489 *** ** * * ** ** ** * * * * *** * consensus_4481#0 ATGAGGCTTTTGCAACACTGTCCGACAAGCTGACGCCGCTGATCGATGGTGTGCGGGAGA 583 consensus_4481#1 GCGGNG----AAAAAAGGAAAACAAAAAAGTGGCTCCNC--------------------- 524 * * ** * * ** ** * ** * consensus_4481#0 ACAAGCAGCACTGGATCGAGCTGGCCCAAAGCGCGAAGGAGGCGTACGCAAACAACAATA 643 consensus_4481#1 ------------------------------------------------------------ consensus_4481#0 ACACGAGCGAAAACAATAATAACAACAAGAGCCCCTGCACGGACCATGCGGAGGACGACG 703 consensus_4481#1 ------------------------------------------------------------ consensus_4481#0 GCCACCAGCAAGAATGGGGGTGGTGGAGTGCGTCCGCAGCCCGCTCGGATCACCAGCAAG 763 consensus_4481#1 ------------------------------------------------------------ consensus_4481#0 TAGCCACGAGTCNGCCACCACTAACAGTAGTC 795 consensus_4481#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||