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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1046 fasta sequence
[AGATCGCCGAGGAACAACGAACGTTTGCCGTCCTCGCGTAGAAATGGCCAGTTTGTGCGTGTAATTGATAAAATTTGTAGACTCTGCTTATCGGAAAATGAAGCAATTCTACTGCCAACATCACAGGTCATCGATTCAACACTGACCGTCGATGATATTGAGCAATGTACCGGCGTACGGGTGGAAGAAGAACACGTGACGTACGTGATTTGCGAACCGTGCCACAATAAGCTGCAAAAATTTACCGCCTACCGATACTTCTGCTTAAGCAATGACGAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCCAGCGCGACGTTCGAACACAGCTACTTTCGAATGGACGGTGACAGTGAGTACGTGATTACCTACGCCAAACCCTCGGATGATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCGGAAGAGCATGTTGAAATGGTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATTACCGTCCGAAGCCGAACTTTCCACAGAGGAGCTGGAAGAGTTTGAGCCTCCGGAGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGAGCGACGCGAGCCGCACATAATATTGGCGACTGGTACGAATGCAAGCTTTGCGATCTGAAATTTCGCCATCCGGGAAGCTTGCGGGACCACAACAATCGCAAGCACAATGTGGCGAGCAACTGCGAATGCACAATCTGCGGCATGATGTTTGAGGACAGCTACGGATTGAAGAAACATGGCCGAGTGCACTCGAACGAGCAACCGTTTGCGTGTCGCTACTGTCCGAAGCGTTTCAAGAGCCCGAACGCGCACCGGGCACACGAGCTGATCCACCAGGGTGTCGTGTTCACGTGTGAATACTGTAAGAAAACCTATCGGTACAAATCGCTGCTCAATATGCATGTGAAAAAAGAGCACAAGAAGCAGGTGGCCGAAAGCGAAACAAAAAATGATTA]
[+] EMBL AL930211 [AGATCGCCGAGGAACAACGAACGTTTGCCGTCCTCGCGTAGAAATGGCCAGTTTGTGCGTGTAATTGATAAAATTTGTAGACTCTGCTTATCGGAAAATGAAGCAATTCTACTGCCAACATCACAGGTCATCGATTCAACACTGACCGTCGATGATATTGAGCAATGTACCGGCGTACGGGTGGAAGAAGAACACGTGACGTACGTGATTTGCGAACCGTGCCACAATAAGCTGCAAAAATTTACCGCCTACCGATACTTCTGCTTAAGCAATGACGAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCCAGCGCGACGTTCGAACACAGCTACTTTCGAATGGACGGTGACAGTGAGTACGTGATTACCTACGCCAAACCCTCGGATGATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCG ]
[+] EMBL BX627492 [ GACAGTGAGTACGTGATTAGCTACGCCAAACCCTCGGATGATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCGGAAGAGCATGTTGAAATGGTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATTACCGTCCGAAGCCGAACTTTCCACAGAGGAGCTGGAAGAGTTTGAGCCTCCGGAGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGAGCGACGCGAGCCGCACATAATATTGGCGACTGGTACGAATGCAAGCTTTGCGATCTGAAATTTCGCCATCCGGGAAGCTTGCGGGACCACAACAATCGCAAGCACAATGTGGCGAGCAACTGCGAATGCACAATCTGCGGCATGATGTTTGAGGACAGCTACGGATTGAAGAAACATGGCCGAGTGCACTCGAACGAGCAACCGTTTGCGTGTCGCTACTGTCCGAAGCGTTTCAAGAGCCCGAACGCGCACCGGGCACACGAGCTGATCCACCAGGGTGTCGTGTTCACGTGTGAATACTGTAAGAAAACCTATCGGTACAAATCGCTGCTCAATATGCATGTGAAAAAAGAGCACAAGAAGCAGGTGGCCGAAAGCGAAACAAAAAATGATTA]
consensusID : consensus_4486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence
[AGATCGGCACAGGAATTNAAAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCGAGTGCGATGTCCGAACACAGCTACTTCCGAATGGGCGATGACAGTGAGTACGTGATTAGCTACGCCAAACCATCGGATGATGGTTATGAAGAAGTAATCGAGGCGTTTGGGCTCGAAGAACATCTAGAGCCGGAAGAGCATGTTGAAATACTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATCACCGTCCGAAGCCGAACCTTTCACAGAGGAGCTGGAAGAGATTGAGCCTCCGGTGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGGGCGACGATTGGTAAAGAGCAGGATAGTTCGGTGAAAAAACCACGGGTGTATAAGAAGCGACCAAATCGAAACAAGCTGCCCAAGAAGCTGTGCACGGTGTGTGGTAAGTTTTGTGGCCCACTTGAACCATCACCGTTCTATCGCGACACAAAGGAACGAAGGTTCCCTTGGCACATACTGTCCGAGGGCTTTCAGNTCGGCAGCTCGTTATTGGAACGGGTGCACGTAGAAACGGTACATCTTGAGAGNACAGACGGCCAAGAGCTGTGGAGCTGTGGCGATAGGAGCTTTTCGTACAAAGTCCAAGCGTACAACGATCCACATGCCG]
[+] EMBL BX466376 [AGATCGGCACAGGAATTNAAAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCGAGTGCGATGTCCGAACACAGCTACTTCCGAATGGGCGATGACAGTGAGTACGTGATTAGCTACGCCAAACCATCGGATGATGGTTATGAAGAAGTAATCGAGGCGTTTGGGCTCGAAGAACATCTAGAGCCGGAAGAGCATGTTGAAATACTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATCACCGTCCGAAGCCGAACCTTTCACAGAGGAGCTGGAAGAGATTGAGCCTCCGGTGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGGGCGACGATTGGTAAAGAGCAGGATAGTTCGGTGAAAAAACCACGGGTGTATAAGAAGCGACCAAATCGAAACAAGCTGCCCAAGAAGCTGTGCACGGTGTGTGGTAAGTTTTGTGGCCCACTTGAACCATCACCGTTCTATCGCGACACAAAGGAACGAAGGTTCCCTTGGCACATACTGTCCGAGGGCTTTCAGNTCGGCAGCTCGTTATTGGAACGGGTGCACGTAGAAACGGTACATCTTGAGAGNACAGACGGCCAAGAGCTGTGGAGCTGTGGCGATAGGAGCTTTTCGTACAAAGTCCAAGCGTACAACGATCCACATGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4486#0 AGATCGCCGAGGAACAACGAACGTTTGCCGTCCTCGCGTAGAAATGGCCAGTTTGTGCGT 60
consensus_4486#1 ------------------------------------------------------------
consensus_4486#0 GTAATTGATAAAATTTGTAGACTCTGCTTATCGGAAAATGAAGCAATTCTACTGCCAACA 120
consensus_4486#1 ------------------------------------------------------------
consensus_4486#0 TCACAGGTCATCGATTCAACACTGACCGTCGATGATATTGAGCAATGTACCGGCGTACGG 180
consensus_4486#1 ------------------------------------------------------------
consensus_4486#0 GTGGAAGAAGAACACGTGACGTACGTGATTTGCGAACCGTGCCACAATAAGCTGCAAAAA 240
consensus_4486#1 ------------------------------------------------------------
consensus_4486#0 TTTACCGCCTACCGATACTTCTGCTTAAGCAATGACGAGCGCTTCCGGGAACTGTTTTCA 300
consensus_4486#1 ----------------AGATCGGCACAGG-AATTNAAAGCGCTTCCGGGAACTGTTTTCA 43
* ** ** * * *** ***********************
consensus_4486#0 GCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCCAGCGCGACGTTCGAACAC 360
consensus_4486#1 GCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCGAGTGCGATGTCCGAACAC 103
***************************************** ** **** ** *******
consensus_4486#0 AGCTACTTTCGAATGGACGGTGACAGTGAGTACGTGATTACCTACGCCAAACCCTCGGAT 420
consensus_4486#1 AGCTACTTCCGAATGGGCGATGACAGTGAGTACGTGATTAGCTACGCCAAACCATCGGAT 163
******** ******* ** ******************** ************ ******
consensus_4486#0 GATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCGGAAGAG 480
consensus_4486#1 GATGGTTATGAAGAAGTAATCGAGGCGTTTGGGCTCGAAGAACATCTAGAGCCGGAAGAG 223
**************** ********* *********** **** **** ***********
consensus_4486#0 CATGTTGAAATGGTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGG 540
consensus_4486#1 CATGTTGAAATACTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGG 283
*********** ***********************************************
consensus_4486#0 TCCGCCACTACACCACCATTACCGTCCGAAGCCGAACTTTCCACAGAGGAGCTGGAAGAG 600
consensus_4486#1 TCCGCCACTACACCACCATCACCGTCCGAAGCCGAACCTTTCACAGAGGAGCTGGAAGAG 343
******************* ***************** ** *******************
consensus_4486#0 TTTGAGCCTCCGGAGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGAGCGACGCGA 660
consensus_4486#1 ATTGAGCCTCCGGTGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGGGCGACG--- 400
************ ************************************ ******
consensus_4486#0 GCCGCACATAATATTGGCGACTGGTACGAATGCAAGCTTTGCGATCTGAAATTTCGCCAT 720
consensus_4486#1 ------------ATTGGTAAAGAGCAGGA----TAGTTCGGTGA---AAAA-------AC 434
***** * * * ** ** * * ** *** *
consensus_4486#0 CCGGGAAGCTTGCGGGACCACAACAATCGCAAGCACAATGTGGCGAGCAACTGCGAATGC 780
consensus_4486#1 CACGGGTGTATAAGAAGCGACCA-AATCG-AAACAAGCTGCC-CAAGAAGCTG----TGC 487
* ** * * * * ** * ***** ** ** ** * ** * *** ***
consensus_4486#0 ACAATCTGCGGCATGATGTTTGAGGACAGCTACGGATTGAAGAAACATGGC-CGAGTGC- 838
consensus_4486#1 ACGGTGTGTGGTAAGT--TTTGTGGCCCAC------TTGAACCATCACCGTTCTATCGCG 539
** * ** ** * * **** ** * * ***** * ** * * * **
consensus_4486#0 ACTCGAACGAGCAACCGTTTGCGTGTCGC-TACTGTCCGAAGCGTTTCAAGAGCCCGAAC 897
consensus_4486#1 ACACAAAGGAACGAAGGTTCCCTTGGCACATACTGTCCGAGGGCTTTCA---GNTCGGCA 596
** * ** ** * * *** * ** * * ********** * ***** * **
consensus_4486#0 GCGCACCGGGCACACGAGCTGATCCACCAGGGTGTCGTGT-TCACGTGTGAATACTGTAA 956
consensus_4486#1 GCTC----GTTATTGGAACGGGTGCACGTAGAAACGGTACATCTTGAGAGNACAGACGGC 652
** * * * ** * * * *** * ** ** * * * * *
consensus_4486#0 GAAAACCTATCGGTACAAATCGCTGCTCAATATGCATGTGAAAA--AAGAGCACAAGAAG 1014
consensus_4486#1 CAAGAGCTGTGGAGCTGTGGCGATAGGAGCTTTTCGTACAAAGTCCAAGCGTACAACGAT 712
** * ** * * ** * * * * * ** *** * **** *
consensus_4486#0 CAGGTGGCCGAAAGCGAAACAAAAAATGATTA 1046
consensus_4486#1 CCACATGCCG---------------------- 722
* ****
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||