These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 673 fasta sequence [CCCCCCCCTGCCGCAGCAGATCGCCCGAGGTNTGGTCCACTACAATAAATCTTGCGCAGGTATGGCACGCTCAAGAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTCATGTTTTGCGGCACAAACATAATNTCATTACCGTAAGCTTTAAAATGTGGAACGGGGGTGGAGCGTGTAACATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGCAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATANATACTATTCTATAACTATAGACTACCGATGCTATAGACTACCGATACTACGGGTGACCCCAGAACGATCGCCTATCTGCCTACCGTTAGATCCACTCTGTTNAACTGATGTATGATCCAATCTACACACTGTGGTACGCAGTTTCCTATAACCAACAGTCGACTGTTACACACCTGANACTATNTCTATCTCTCTGGCTCTGTATTAGCCTTNNNCATTCACTTTCACCCCTCTCTAATTTGAAACTGCCTCTTATTTGAACAGTCCATCGGCCTCTCCAACANATCTAACCAATAAAAAATACCAATAACTAATAN] [+] EMBL AL934604 [CCCCCCCCTGCCGCAGCAGATCGCCCGAGGTNTGGTCCACTACAATAAATCTTGCGCAGGTATGGCACGCTCAAGAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTCATGTTTTGCGGCACAAACATAATNTCATTACCGTAAGCTTTAAAATGTGGAACGGGGGTGGAGCGTGTAACATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGCAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATANATACTATTCTATAACTATAGACTACCGATGCTATAGACTACCGATACTACGGGTGACCCCAGAACGATCGCCTATCTGCCTACCGTTAGATCCACTCTGTTNAACTGATGTATGATCCAATCTACACACTGTGGTACGCAGTTTCCTATAACCAACAGTCGACTGTTACACACCTGANACTATNTCTATCTCTCTGGCTCTGTATTAGCCTTNNNCATTCACTTTCACCCCTCTCTAATTTGAAACTGCCTCTTATTTGAACAGTCCATCGGCCTCTCCAACANATCTAACCAATAAAAAATACCAATAACTAATAN] [+] EMBL BX620938 [ GAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTT ATGTTTTGCGG ACAAA ATAAT TCATT CCGTAAGCTTTAAAATGTGGAAGGGGGGTGGA ] consensusID : consensus_4492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [GTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTATGTTTTGCGGACAAAATAATTCATTCCGTAAGCTTTAAAATGTGGAAGGGGGGTGGAGGTGTAAATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATAGATACTATTCTATAGACTATAGACTACCGATGCTATAGACTACCGATCTACGGGGCCCCAGACGATCGCCTAGTCTGCCTACCGTTAGATCCACCTCTGTTAATGATGTATGATCCAATCTACAACTGTGTTCGCAGTTTCCTATAACAACAGTCGATGTTACACACTGAATATTTTATCTCTCTGGCTTGTATTAGCTTTTCATTCACTTTCACCCTCTCTAATTTGAAACTGCCTCTTATTTGAAAGTCCATTCGGCTCTCCACAATATTTAACCATAAAAAAAATACAAATAAATAAATAAAAATATATAATTAAATATAAAAT] [+] EMBL BX626330 [GTACCAGACGATTGCGTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAATATCAGTTGTTATGTTTTGCGGACAAAATAATTCATTCCGTAAGCTTTAAAATGTGGAAGGGGGGTGGAGGTGTAAATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTCCGGGGGCCCTTGGAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATAGATACTATTCTATAGACTATAGACTACCGATGCTATAGACTACCGATCTACGGGGCCCCAGACGATCGCCTAGTCTGCCTACCGTTAGATCCACCTCTGTTAATGATGTATGATCCAATCTACAACTGTGTTCGCAGTTTCCTATAACAACAGTCGATGTTACACACTGAATATTTTATCTCTCTGGCTTGTATTAGCTTTTCATTCACTTTCACCCTCTCTAATTTGAAACTGCCTCTTATTTGAAAGTCCATTCGGCTCTCCACAATATTTAACCATAAAAAAAATACAAATAAATAAATAAAAATATATAATTAAATATAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4492#0 CCCCCCCCTGCCGCAGCAGATCGCCCGAGGTNTGGTCCACTACAATAAATCTTGCGCAGG 60 consensus_4492#1 ------------------------------------------------------------ consensus_4492#0 TATGGCACGCTCAAGAATGCTCATCCGCGAAACATAGCGAATTATGTACCAGACGATTGC 120 consensus_4492#1 ---------------------------------------------GTACCAGACGATTGC 15 *************** consensus_4492#0 GTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAAT 180 consensus_4492#1 GTACCGTATGCGTTAGTTAATCCACAAGACTTACGAATTGAATAAGCTTGACGTTAAAAT 75 ************************************************************ consensus_4492#0 ATCAGTTGTTCATGTTTTGCGGCACAAACATAATNTCATTACCGTAAGCTTTAAAATGTG 240 consensus_4492#1 ATCAGTTGTT-ATGTTTTGCGG-ACAAA-ATAATT-CATT-CCGTAAGCTTTAAAATGTG 130 ********** *********** ***** ***** **** ******************* consensus_4492#0 GAACGGGGGTGGAGCGTGTAACATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTC 300 consensus_4492#1 GAAGGGGGGTGGAG-GTGTAA-ATTATTTGCCAGCCTCGGGGTCCCAACGTCCACCCTTC 188 *** ********** ****** ************************************** consensus_4492#0 CGGGGGCCCTTGGCAGCTAGTAATCTGTCTACTTTTATACACACACTATACAATANATAC 360 consensus_4492#1 CGGGGGCCCTTGG-AGCTAGTAATCTGTCTACTTTTATACACACACTATACAATAGATAC 247 ************* ***************************************** **** consensus_4492#0 TATTCTATA-ACTATAGACTACCGATGCTATAGACTACCGATACTACGGGTGACCCCAGA 419 consensus_4492#1 TATTCTATAGACTATAGACTACCGATGCTATAGACTACCGAT-CTACGGG--GCCCCAGA 304 ********* ******************************** ******* ******* consensus_4492#0 ACGATCGCCTA-TCTGCCTACCGTTAGATCCAC-TCTGTTNAACTGATGTATGATCCAAT 477 consensus_4492#1 -CGATCGCCTAGTCTGCCTACCGTTAGATCCACCTCTGTTAA--TGATGTATGATCCAAT 361 ********** ********************* ****** * **************** consensus_4492#0 CTACACACTGTGGTACGCAGTTTCCTATAACCAACAGTCGACTGTTACACACCTGANACT 537 consensus_4492#1 CTACA-ACTGTG-TTCGCAGTTTCCTATAAC-AACAGTCGA-TGTTACACACTGAATA-- 415 ***** ****** * **************** ********* ********** * * consensus_4492#0 ATNTCTATCTCTCTGGCTCTGTATTAGCCTTNNNCATTCACTTTCACCCCTCTCTAATTT 597 consensus_4492#1 --TTTTATCTCTCTGGCT-TGTATTAGC--TTTTCATTCACTTTCACCC-TCTCTAATTT 469 * ************* ********* * *************** ********** consensus_4492#0 GAAACTGCCTCTTATTTGAACAGTCCATCGGCCTCTCCAACANATCTAACCA-ATAAAAA 656 consensus_4492#1 GAAACTGCCTCTTATTTGAA-AGTCCATTCGGCTCTCCACAATATTTAACCATAAAAAAA 528 ******************** ******* * ******* * ** ****** * ***** consensus_4492#0 ATACCAATAACTAA-TAN----------------------- 673 consensus_4492#1 ATACAAATAAATAAATAAAAATATATAATTAAATATAAAAT 569 **** ***** *** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||