cluster # 4494

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Anopheles gambiae
cluster # 4494 cluster # 4494 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4494#0 length = 679 sequences # 2

consensus_4494#1 length = 610 sequences # 1

consensusID : consensus_4494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 679
fasta sequence

                              [CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGC-GTGGATAAGGACGAATTTCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCACTCGTCAAGCTCTCCTGCAC]

[+] EMBL BM643444             [CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGC GTGGATAAGGACGAATTTCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCACTCGTCAAGCTCTCCTGCAC]
[+] EMBL BM591435             [         ccgaatGGCGATGTACACAAACCGTGTCGTTCGCTGGTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGCTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGGTGGATAAGGACGAATTTCTTGTGAT                                                                      ]




>consensus_4494#0
CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCC
ATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCA
ACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGC
GACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGA
CAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTT
CGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCC
CCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTA
CACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAAT
AATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTT
CCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATT
TCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCAC
TCGTCAAGCTCTCCTGCAC

consensusID : consensus_4494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATTTCTTGTGATGGAAAAAATTTT]

[+] EMBL BM656456             [CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCCCCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATTTCTTGTGATGGAAAAAATTTT]




>consensus_4494#1
CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCCATTTTTCACAG
TGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCAACATCCAACCG
TGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGCGACCTACCGAA
ATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGACAAGGCCATTA
AGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTTCGATGGGCAGA
TCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCCCCGACCACGGC
TCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTACACGCCACCGT
TGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAATAATTTCGTACA
CCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTTCCGCATTGCCT
TTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATTTCTTGTGATGG
AAAAAATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4494#0      CCGCCCACGCGTCCGGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCC 60
consensus_4494#1      -----------CCGTGGCGATGTACACAAACCGTGTCGTTCGCTGCTCGAAAACAAATCC 49
                                  *  *********************************************

consensus_4494#0      ATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCA 120
consensus_4494#1      ATTTTTCACAGTGTTGTCGCGCAATTTCGGTAACAATTCTAGTGCCCGCAAATGGTACCA 109
                      ************************************************************

consensus_4494#0      ACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGC 180
consensus_4494#1      ACATCCAACCGTGCGGTACATTTGTTTGGTGAGCGGTGGACTGCTCGCGTTCACCGCAGC 169
                      ************************************************************

consensus_4494#0      GACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGA 240
consensus_4494#1      GACCTACCGAAATCGACCGAAGGTTTACGCGCTCCAGCTGCGAAAGGATGAAATTGCGGA 229
                      ************************************************************

consensus_4494#0      CAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTT 300
consensus_4494#1      CAAGGCCATTAAGCTTACAGCGCGCGAGCGGCGCTTCATCAAGTTCGCCTCGGTCGAGTT 289
                      ************************************************************

consensus_4494#0      CGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTCGTCGAACAGGAGCC 360
consensus_4494#1      CGATGGGCAGATCTACATGACACCACAAGACTTTCTGGAGTCGGTTGTCGAACAGGAGCC 349
                      ********************************************* **************

consensus_4494#0      CCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTA 420
consensus_4494#1      CCGACCACGGCTCAAACGGAAGTCATTAACGCACGCCGAGATTCAGCAGCTGAAAGATTA 409
                      ************************************************************

consensus_4494#0      CACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAAT 480
consensus_4494#1      CACGCCACCGTTGAAGCACGGTTCGTCGCAGCTTTTCCGCAGCCTTCGGGACAAAGGAAT 469
                      ************************************************************

consensus_4494#0      AATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTT 540
consensus_4494#1      AATTTCGTACACCGAGTATCTGTTTCTTCTATCGGTGCTCACAAAGCCTCACTCTGGCTT 529
                      ************************************************************

consensus_4494#0      CCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATT 600
consensus_4494#1      CCGCATTGCCTTTAACATGTTCGACACGGACGGAAATCAACGCGTGGATAAGGACGAATT 589
                      ************************************************************

consensus_4494#0      TCTTGTGATTCGACAGCTGCTCGGAGGATCGCTGAAGGATCGTGATCTAGACGAGGCCAC 660
consensus_4494#1      TCTTGTGATGGAAAAAATTTT--------------------------------------- 610
                      *********   * *  *  *                                       

consensus_4494#0      TCGTCAAGCTCTCCTGCAC 679
consensus_4494#1      -------------------