These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1017 fasta sequence [CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCTTTCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTTTTTTTTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGAATAACGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCCGAGGTGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCATACGCGTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTGCGTGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTGGAAATAACGCCCAACTATTCGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGACACGCGCGTCTGGATGGTGAAGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATGGCGGTCATCTTTGGCGGCCAGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGGCTGCTAGCAATATGGAACACACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACAGCGCCCGAGCTGGTACACGTACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCTAGCTTTATTGAACACGACCGTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAGCTGCCGGAACTGGGCGACACGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTGCACTGGTACCACCACA] [+] EMBL BM634965 [CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCTTTCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTTTTTTTTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGAATAACGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCCGAGGTGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCATACGCGTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTGCGTGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAG ] [+] EMBL BM645334 [ cCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTCTGTGCGTGAGTGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTGGAAATAACGCCCAACTATTCGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGACACGCGCGTCTGGATGGTGAAGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATGGCGGTCATCTTTGGCGGCCAGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGGCTGCTAGCAATATGGAACACACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACAGCGCCCGAGCTGGTACACGTACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCTAGCTTTATTGAACACGACCGTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAGCTGCCGGAACTGGGCGACACGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTGCACTGGTACCACCACA] consensusID : consensus_4500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACACACCACCCGGAATAAAAAGTCGGTTTTAATCCGAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCTAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCCTCCCCACACACATACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACAAGTGTCTGTGTGTGTGTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTGCAGTGACTGTGTCGGTGTAAGTGTGTGCGTGCGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATG] [+] EMBL BM589955 [CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTTTCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACACACCACCCGGAATAAAAAGTCGGTTTTAATCCGAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCTAAACGTCTAATCATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCCTCCCCACACACATACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACAAGTGTCTGTGTGTGTGTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCCGGCAAAACGGGAAGAACCGCGTGTTGTGCAGTGACTGTGTCGGTGTAAGTGTGTGCGTGCGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4500#0 ----CCGACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTT 56 consensus_4500#1 CCGGACAACCGAAACCACCCGTGGTCGATTTTTCGCACAACGCCGCACCGTGTGTGTGTT 60 * ***************************************************** consensus_4500#0 TCTTTCCCACCCAACCCTCCACCACCGCTGGGCCACCTGGAGACACCACCCGATAAGGTT 116 consensus_4500#1 TCGTTCCCACCCAACCCTTCACCATCGCTGGGCCACCTGGAGACAC-------------- 106 ** *************** ***** ********************* consensus_4500#0 TTTTTTTAATAGAAACATCTCTTGCGGTAACAGCGTTAAAGGCAACAACAACAACAGAGA 176 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 ATAACGCATCGCGTAGAAACAAACACACCGTTCGTGGGAATAAAAAGTCGGTTTTAATCC 236 consensus_4500#1 --------------------------ACCACCCG---GAATAAAAAGTCGGTTTTAATCC 137 *** ** *********************** consensus_4500#0 GAGGTGTTCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCAAAACGTCTAAT 296 consensus_4500#1 GAGGTGACCGTCACGGCAACCGGTTGTCCGTATGATCGAAAGTGTCGCTAAACGTCTAAT 197 ****** **************************************** *********** consensus_4500#0 CATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACCTCCCCCCACACTCAT 356 consensus_4500#1 CATTAGGTAAACAAGTGCTAGGTTACAGCGCTACCGCTTGTAACC-CTCCCCACACACAT 256 ********************************************* * ******** *** consensus_4500#0 ACGCGTT-GGTGCTCGCGATCGCGCTAGGATAATATTTATTGACCAGTGTCAGTGTGTGT 415 consensus_4500#1 ACGCGTTTGGTGCTCGCGATCGCGCTAGGATAATATTTATTGACAAGTGTCTGTGTGTGT 316 ******* ************************************ ****** ******** consensus_4500#0 G------------GAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCC 463 consensus_4500#1 GTGTGGAAGTGTGGAAGTGTGTGCGCGTACTTTTGAAGGCCGCGCAAATCGCCCCCTGCC 376 * *********************************************** consensus_4500#0 GGCAAAACGGGAAGAACCGCGTGTTGTTGCAGTGACTGTGTCGGTGTAAGTGCGTGCGTG 523 consensus_4500#1 GGCAAAACGGGAAGAACCGCGTGTTGT-GCAGTGACTGTGTCGGTGTAAGTGTGTGCGTG 435 *************************** ************************ ******* consensus_4500#0 CGTG--TGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATGAATGTG 581 consensus_4500#1 CGTGCGTGTGTGTGTGTATCCTGAACGTCCTGTTTGCAGCGCGGCCTCAAGATG------ 489 **** ************************************************ consensus_4500#0 GAAATAACGCCCAACTATTCGTACATTTTCGACTTCGAGAATGAGTTCATCCACCAGGAC 641 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 ACGCGCGTCTGGATGGTGAAGAACTGGACGTACGTGTTCTACTACTGCGGCATCTACATG 701 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 GCGGTCATCTTTGGCGGCCAGTACTACATGCAAAACAGGCCAAGATTCGAGCTGCGAGGG 761 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 CTGCTAGCAATATGGAACACACTACTGGCAATGTTCAGCATAATGGGGGCCTGCCGGACA 821 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 GCGCCCGAGCTGGTACACGTACTCCGACACTACGGGCTCTTCCACTCCGTTTGCGTTCCT 881 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 AGCTTTATTGAACACGACCGTGTCAGTGGTTTCTGGACATGGTTGTTCGTGCTGTCGAAG 941 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 CTGCCGGAACTGGGCGACACGGTGTTCATCGTGCTGCGGAAGCAGCCGCTCATCTTCCTG 1001 consensus_4500#1 ------------------------------------------------------------ consensus_4500#0 CACTGGTACCACCACA 1017 consensus_4500#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||