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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[CAGAATCCCCGCACGAGGTGGGAAGCGAGCGGTCTAGCTATTGATAGTGTGTTTGTGCTTGAGGGCTATTACGATATATTTTTTAGTTAATTTTCTCATCGTCTGAACAGTTCGATTAGAGCAGACGCGAATGGACAGAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTTACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTGTTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCATCCTAATATTACATTTATCACACTGCCTTTTATATTTAGTAATGGATTTGTTTTCCATGGATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAGTGCGCTGCATTTCATCATATCCCATCCCCCGGTTGGCCCGGGGTTAAAGGATCAACGGCATTAGACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAGGTGAAGAGACTGTTTAAAGATTAACGAACAAGTCAAAACGCAGGACATTGATCATTGAAGTAGCAACAAGTGCGTGTACCTACAGGTAGATCAAAACAGAACGATCTGCGTATTAAAGGCAAACCAATTACCCAGAGAGANAACTTNGAAGTTAAAAAAGTTTGGTTGAAACGGAATGTTGTTCAAACAGGAAGGATTGGAAGCCTTGGGGTAAAGTATGTTTGGGGAAAAATTCCTTGGGACCCCAGCGAAAGGGTCGGACTT]
[+] EMBL BX467463 [CAGAATCCCCGCACGAGGTGGGAAGCGAGCGGTCTAGCTATTGATAGTGTGTTTGTGCTTGAGGGCTATTACGATATATTTTTTAGTTAATTTTCTCATCGTCTGAACAGTTCGATTAGAGCAGACGCGAATGGACAGAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTTACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTGTTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCATCCTAATATTACATTTATCACACTGCCTTTTATATTTAGTAATGGATTTGTTTTCCATGGATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAGTGCGCTGCATTTCATCATATCCCATCCCCCGGTTGGCCCGGGGTTAAAGGATCAACGGCATTAGACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAGGTGAAGAGACTGTTTAAAGATTAACGAACAAGTCAAAACGCAGGACATTGATCATTGAAGTAGCAACAAGTGCGTGTACCTACAGGTAGATCAAAACAGAACGATCTGCGTATTAAAGGCAAACCAATTACCCAGAGAGANAACTTNGAAGTTAAAAAAGTTTGGTTGAAACGGAATGTTGTTCAAACAGGAAGGATTGGAAGCCTTGGGGTAAAGTATGTTTGGGGAAAAATTCCTTGGGACCCCAGCGAAAGGGTCGGACTT]
consensusID : consensus_4514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence
[TCTCATCGTCTGAACAGTTCGATTAGAGCAGACGCGAATGGACAGAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTTACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTGTTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCATCCTAATATTACATTTATCACACTGCCTTTTATATTTAGTAATGGATTTGTTTTCCATGGATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAGT--GCGCTGCATTTCATCATATCCCATCCCCCGTTGGCCCGGGGTTAAAGGATCAACGGCATTAGACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAGTGAAGAGACTGTTTAAAGATTAACGAACAACTCAAACGCAGGACATTGATCATTGAAGTAGCAACAAGTGCGTGTACCTACAGTAGATCAAAACAGAACGATCTGCGTATAAAAGCAAACCAATACCAAAAAAATGAGTAAAAGTTGTGACGATTTTAAAGAGATTGAGCTTGGTAGTGTTGGAAATTCTTGACCAGCGAGGTGATTTATTTGGACCCCTACAAACGAACGAATTGCNAATTAACCCCGCGCCGGANAATGGCGATTGTCGAAATATCATTAAAAGAATAGGCTTTTTCCCCCACGCCCCTCCGCCGATGGGATGTACACGTTTGGTGTCA]
[+] EMBL BX602270 [TCTCATCGTCTGAACAGTTCGATTAGAGCAGACGCGAATGGACAGAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTTACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTGTTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCATCCTAATATTACATTTATCACACTGCCTTTTATATTTAGTAATGGATTTGTTTTCCATGGATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAGT GCGCTGCATTTCATCATATCCCATCCCCCGTTGGCCCGGGGTTAAAGGATCAACGGCATTAGACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAGTGAAGAGACTGTTTAAAGATTAACGAACAACTCAAACGCAGGACATTGATCATTGAAGTAGCAACAAGTGCGTGTACCTACAGTAGATCAAAACAGAACGATCTGCGTATAAAAGCAAACCAATACCAAAAAAATGAGTAAAAGTTGTGACGATTTTAAAGAGATTGAGCTTGGTAGTGTTGGAAATTCTTGACCAGCGAGGTGATTTATTTGGACCCCTACAAACGAACGAATTGC ]
[+] EMBL BX622468 [ CGCGATTGGACAAAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTTACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTGTTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCATCCTAATATTACATTTATCACACTGCCTTTTATGTTTAGTAATGGATTTGTTTTCCATGGATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAGTCCGCGCTGCATTTCATCATATCCCATCCCCCGTTGGCCCGGGGTTAAAGGATCAACGGNATTANACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAGTGAAGAGACTGTTTAAAGATTAACGAACAACTCAAACGCANGACATTGACCATTGAAGTATCAACAAGTGCGTGTACCTACAGTANATCAAAACAGAACGATCTGCGTATAAAAGCAAACCAATACCAAAAAAATGAGTAAAAGTTGTGACGATTTTAAAGAGATTGAGCTTGGTAGTGTTGGAAATTCTTGACCAGCGANGTGATTTATTTGGACCCATACAAACGAACGAATTGCNAATTAACCCCGCGCCGGANAATGGCGATTGTCGAAATATCATTAAAAGAATAGGCTTTTTCCCCCACGCCCCTCCGCCGATGGGATGTACACGTTTGGTGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4514#0 CAGAATCCCCGCACGAGGTGGGAAGCGAGCGGTCTAGCTATTGATAGTGTGTTTGTGCTT 60
consensus_4514#1 ------------------------------------------------------------
consensus_4514#0 GAGGGCTATTACGATATATTTTTTAGTTAATTTTCTCATCGTCTGAACAGTTCGATTAGA 120
consensus_4514#1 ---------------------------------TCTCATCGTCTGAACAGTTCGATTAGA 27
***************************
consensus_4514#0 GCAGACGCGAATGGACAGAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTT 180
consensus_4514#1 GCAGACGCGAATGGACAGAAGGACTACCCATACTACTGTTGCATGGGCAATTCCATGGTT 87
************************************************************
consensus_4514#0 ACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTG 240
consensus_4514#1 ACTTTGAATGGGTAAAGTAACGCACCAGACTTTTATGTAGCTTATTTTTTATTGAATTTG 147
************************************************************
consensus_4514#0 TTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCA 300
consensus_4514#1 TTCTCAAACATAGCCAATGTTGGACACGCGTAATTCATATCTTGTGATTTCTAATCCTCA 207
************************************************************
consensus_4514#0 TCCTAATATTACATTTATCACACTGCCTTTTATATTTAGTAATGGATTTGTTTTCCATGG 360
consensus_4514#1 TCCTAATATTACATTTATCACACTGCCTTTTATATTTAGTAATGGATTTGTTTTCCATGG 267
************************************************************
consensus_4514#0 ATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAG 420
consensus_4514#1 ATCGGTGGTTCGTTTGGTCGATATATACTAAAAGGACTAAAAGCTGGGCGTGGCGAATAG 327
************************************************************
consensus_4514#0 TGCGCTGCATTTCATCATATCCCATCCCCCGGTTGGCCCGGGGTTAAAGGATCAACGGCA 480
consensus_4514#1 TGCGCTGCATTTCATCATATCCCATCCCCCG-TTGGCCCGGGGTTAAAGGATCAACGGCA 386
******************************* ****************************
consensus_4514#0 TTAGACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAGGTGAAGAG 540
consensus_4514#1 TTAGACATCTGTAAAAGCCCGGGCATCTTTGTGCGCAAGGGGTAGAGCATAG-TGAAGAG 445
**************************************************** *******
consensus_4514#0 ACTGTTTAAAGATTAACGAACAAGTCAAAACGCAGGACATTGATCATTGAAGTAGCAACA 600
consensus_4514#1 ACTGTTTAAAGATTAACGAACAACTCAAA-CGCAGGACATTGATCATTGAAGTAGCAACA 504
*********************** ***** ******************************
consensus_4514#0 AGTGCGTGTACCTACAGGTAGATCAAAACAGAACGATCTGCGTATTAAAGGCAAACCAAT 660
consensus_4514#1 AGTGCGTGTACCTACAG-TAGATCAAAACAGAACGATCTGCGTAT-AAAAGCAAACCAAT 562
***************** *************************** *** **********
consensus_4514#0 TACCCAGAGA-----GANAACTTNGAAG---TTAAAAA-----AGTTTGGTTGAAACGGA 707
consensus_4514#1 ACCAAAAAAATGAGTAAAAGTTGTGACGATTTTAAAGAGATTGAGCTTGGTAGTGTTGGA 622
* * * * * * * ** * ***** * ** ***** * ***
consensus_4514#0 A--TGTTGTTCAAACAGGAAGG--ATTGGAAGCCTTGGG------------GTAAAGTAT 751
consensus_4514#1 AATTCTTGACCAGCGAGGTGATTTATTTGGACCCCTACAAACGAACGAATTGCNAATTAA 682
* * *** ** *** *** * * ** * * ** **
consensus_4514#0 GTTTGGG--GAAAAAT-----TCCTTGGGACCCCAGCGAAAGGGTCGGACTT-------- 796
consensus_4514#1 CCCCGCGCCGGANAATGGCGATTGTCGAAATATCATTAAAAGAATAGGCTTTTTCCCCCA 742
* * * * *** * * * * ** **** * ** **
consensus_4514#0 -------------------------------------
consensus_4514#1 CGCCCCTCCGCCGATGGGATGTACACGTTTGGTGTCA 779
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||