These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 823 fasta sequence [CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGCATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCTCAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGTCGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAGAGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGATCCTGATAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAATGACGTGCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG] [+] EMBL BM619537 [CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGCATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCTCAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGTCGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAGAGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATC ] [+] EMBL BM578078 [ ccgGCACGAAGTGGAACGAATCGTCGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAGAGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGATCCTGATAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAATGACGTGCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG] consensusID : consensus_4518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [AGATCGCCGAGGCAACATCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCA] [+] EMBL AL931121 [AGATCGCCGAGGCAACATCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAAAACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTGCGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAGCTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTACGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTGTGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATTATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTCCAGAGCAACTGCACCACCATCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4518#0 CCGGAACCGTTGCACTGCTTCAACGAAGAAAAAAAAAATACAGCCGCACACGGAGTTAGC 60 consensus_4518#1 ------------------------------------------------------------ consensus_4518#0 ATAGCTAGTAGCCGCCGTAAGCAATCAATGAAAACGCATAGCGTACTGTTATCATAAGCT 120 consensus_4518#1 ------------------------------------------------------------ consensus_4518#0 CAATTCAAGCCAGGCAGTGCCAGTGCTGTGAGTGAAAGAGCACGAAGTGGAACGAATCGT 180 consensus_4518#1 ------------------------------------------------------------ consensus_4518#0 CGAGTGCATTTAACGTATCCTAGAACCGGAAAACTCTTCGTCAAGAGTTACAGTAAAAAG 240 consensus_4518#1 ----------------------------------------------------------AG 2 ** consensus_4518#0 AGCACCACATTTACACAAACATCCAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAA 300 consensus_4518#1 ATCGCCGAGGCAACAT-------CAGAACGAGCTTGCCTGGAGTGCGGTCTACAATTGAA 55 * * ** *** ************************************* consensus_4518#0 AACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTG---- 356 consensus_4518#1 AACAAACTAGTCGAAATAAAAAGCTGGTTGGTTTAGTTTCTGTGTGTGTGTGTGTGTGTG 115 ******************************************************** consensus_4518#0 CGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGGATTGCATCAG 416 consensus_4518#1 CGTGTTGGCACGTGTCAGTGTGTTTGTGGATTGGTTAATCCGCTTTGAGCATTGCATCAG 175 ************************************************* ********** consensus_4518#0 CTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTA 476 consensus_4518#1 CTAAAACAACGGACGGAAGTTGCAGAAATTAGAGTGTGCCGAGTGTGTTGCTGATGGTTA 235 ************************************************************ consensus_4518#0 CGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTG 536 consensus_4518#1 CGTTATATTGCGTTTAACGTTTGCGGCAGAACCAACAGTGTGCGTACGTGTGTGCGTGTG 295 ************************************************************ consensus_4518#0 TGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAAT-ATTTCATCGGTCGTGAATCTATTATT 595 consensus_4518#1 TGTGAGTGCGCAAGCGTGTGTGTAGTTGCAAATCATTTCATCGGTCGTGAATCTATTATT 355 ********************************* ************************** consensus_4518#0 ATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTC 655 consensus_4518#1 ATTGTTGCTGCAACCATCGCTCAACCGACAGAAAAGGGCGACAGCGATTTCGGTCGCGTC 415 ************************************************************ consensus_4518#0 CAGAGCAACTGCACCACCATCACCAGTGTTTGTGCGTTAACACTGTCGCGAAGTAGTGAT 715 consensus_4518#1 CAGAGCAACTGCACCACCATCACCA----------------------------------- 440 ************************* consensus_4518#0 CCTGATAGCGGCAGCAGCAGCAGCGAGGGCATCGTCACAATGCCGAGCAAGCAGACGAAT 775 consensus_4518#1 ------------------------------------------------------------ consensus_4518#0 GACGTGCTGGCGGTGGAAGAGCTGGTACACGAAATCCGCGAAAACCTG 823 consensus_4518#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||