These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 765 fasta sequence [GCAGAATCGCGCACGAGGGAGTATAAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACCTATGCACAGCAATTCTACGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGTAAATCTTTTGCGAATTCTCTATATGCAGTTTGACAAACTTTTANNANATTGGTTCACTTCCATTTTGCGCCTCGATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTTTACATAAAATATGATGTATTATGCTTCTTTCTTATAAGTGATCTA] [+] EMBL BX467478 [GCAGAATCGCGCACGAGGGAGTATAAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACCTATGCACAGCAATTCTACGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGTAAATCTTTTGCGAATTCTCTATATGCAGTTTGACAAACTTTTANNANATTGGTTCACTTCCATTTTGCGCCTCGATTTAGTAG ] [+] EMBL BX622295 [ TTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTATTTGCAGTAGTGGTATTGCTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAACGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTGAAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGT AATCTTTTGCGAA TCTCTATATGCAG TTGA AAA TTTA A ATT GTT AATT CA TTTGCGCCTCGATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTTTACATAAAATATGATGTATTATGCTTCTTTCTTATAAGTGATCTA] consensusID : consensus_4519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCGCTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTATAAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTATGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAA] [+] EMBL BX615417 [CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCGCTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTATAAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGATACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTATGGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCACGATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGGTTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCAGGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTGCTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTCTTTCTAAGTAAAGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4519#0 ------------------------------------------------------------ consensus_4519#1 CACACGACGGTGATTGAAAATACAGGTTGTAAGAAGCGCGAATGGTGGGCTCGCGATGCG 60 consensus_4519#0 -------------------------------GCAGAATC---GCGCACG--AGGGAGTAT 24 consensus_4519#1 CTGCCCGACGACTTCGAGCTGCTTTGTCCGGACGGAACCCGAGCGGAGGTCAACGAGTAT 120 * *** * *** * * * ****** consensus_4519#0 AAGACCTGTAATCTCGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGA 84 consensus_4519#1 AAGACCTGTAATCTGGGCAAGGTGAAATCCAACGCCATCGTAGCTCGCGGAGGACGAGGA 180 ************** ********************************************* consensus_4519#0 TACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACCTATGCACAGCAATTCTAC 144 consensus_4519#1 TACAATGGGACGGAGCTGAACGCGTACATCAATCTGTTTACTTATGCACAGCAATTCTAT 240 ***************************************** ***************** consensus_4519#0 GGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCAC 204 consensus_4519#1 GGAAGGAAATTTTCCGACGAGTTTAGCTTCAGCATGTTTTACTCCATCCCACCGTACCAC 300 ************************************************************ consensus_4519#0 GATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGG 264 consensus_4519#1 GATTTGATCTTTTCCGATGCAACCCGTGGGCTGCGCGTAGTCGACTCGGACAAGCGCTGG 360 ************************************************************ consensus_4519#0 TTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCA 324 consensus_4519#1 TTCGATGCGTATCTTGGACCGAACTTTATGCGCGCACGGCGCATCACCGATTGCCATGCA 420 ************************************************************ consensus_4519#0 GGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTG 384 consensus_4519#1 GGTGCGGGTAGTTTGAAGATCAGTGCCTTCAGTAGCTTGTTGTTTGCAGTAGTGGTATTG 480 ************************************************************ consensus_4519#0 CTCTGGCCAACAAACATATTTTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTC 444 consensus_4519#1 CTCTGGCCAACACACATATATTAAGCTTCGGGTGTGGTTGCTACCCACCTCGTCGGATTC 540 ************ ****** **************************************** consensus_4519#0 TTTCTAAGTAAAGTAATTTCCGTCCAATTTAGATAGCTATACCATGTTATTGCAGGAAAA 504 consensus_4519#1 TTTCTAAGTAAAGTAA-------------------------------------------- 556 **************** consensus_4519#0 CGATCGCAACAGTATAATACTTTGAACATTCCAGTGCGAAGGTTCTCGAACGATAATGTG 564 consensus_4519#1 ------------------------------------------------------------ consensus_4519#0 AAACTCCCACTCAACTAATTAGTTTCGTGTTGATCTATTTGTACAGTAAATCTTTTGCGA 624 consensus_4519#1 ------------------------------------------------------------ consensus_4519#0 ATTCTCTATATGCAGTTTGACAAACTTTTANNANATTGGTTCACTTCCATTTTGCGCCTC 684 consensus_4519#1 ------------------------------------------------------------ consensus_4519#0 GATTTAGTAGCTTAGCTGTAGCTCTTTTTCTCATTTTACATAAAATATGATGTATTATGC 744 consensus_4519#1 ------------------------------------------------------------ consensus_4519#0 TTCTTTCTTATAAGTGATCTA 765 consensus_4519#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||