These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCTAATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATCCTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGTGACCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTAAACGCGCACCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTAAGAGCA] [+] EMBL CNS09PXL [ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCTAATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATCCTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGTGACCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTAAACGCGCACCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTAAGAGCA] consensusID : consensus_4520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [GCGTATCATTATTGCTAACACCGCCCAATCCATCCAGACAGT--AGGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGGCTAACGCGCCACCGGTGCACGATACCGCGTGAGCGTGACGTTACTGCGCACCGTTCGCGTACCCGTACCAGCGAGGAGTCGCGCGGAAACGCTTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATGTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCTCGTTTTGCACCGGCTGATGTTGTTTTCGG] [-] EMBL BM644461 [GCGTATCATTATTGCTAACACCGCCCAATCCATCCAGACAGT AGGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGGCTAACGCGCCACCGGTGCACGATACCGCGTGAGCGTGACGTTACTGCGCACCGTTCGCGTACCCGTACCAGCGAGGAGTCGCGCGGAAACGCTTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATGTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCTCGTTTTGCACCGGCTGATGTTGTTTTCGG] [-] EMBL CNS09PXK [ ttttGCCCAATCCTTCCAGACAGTAGAGGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGG TAACGCGCCACCGGTGCACGATACCGCGTGAGCGCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATTTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4520#0 ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCT 60 consensus_4520#1 ------------------------------------------------------------ consensus_4520#0 AATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATC 120 consensus_4520#1 ------------------------------GCGTATCATTATTGCTAACACCGCCCAATC 30 ****************************** consensus_4520#0 CTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTG 180 consensus_4520#1 CATCCAGACAGTA--GGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTG 88 * *********** ********* *********************************** consensus_4520#0 TAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGT 240 consensus_4520#1 TAGTCGGCCAGATGACGCCACACGATACGGCTAACGCGCCACCGGTGCACGATACCGCGT 148 ********************** ***************************** ******* consensus_4520#0 GACCG--ACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAAC 298 consensus_4520#1 GAGCGTGACGTTACTGCGCACCGTTCGCGTACCCGTACCAGCGAGGAGTCGCGCGGAAAC 208 ** ** **************************** ************************ consensus_4520#0 GCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGC 358 consensus_4520#1 GCTTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGC 268 ** ****************************** ************************** consensus_4520#0 AGTGAGTAAACGCGCA-CCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGG 417 consensus_4520#1 AGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGG 328 ******* ******** ******************************************* consensus_4520#0 TCCTTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCC 477 consensus_4520#1 TCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCC 388 ******************* **************************************** consensus_4520#0 AAATTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGG 537 consensus_4520#1 AAATGTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGG 448 **** ************************** **************************** consensus_4520#0 TCGCGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCA 597 consensus_4520#1 TCGCGAGCACCTCGTTTTGCACCGGCTGATGTTG--------TTTTCGG----------- 489 ******** ****************** ** * ** *** consensus_4520#0 GCTTTTAAGAGCA 610 consensus_4520#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||