These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 971 fasta sequence [CCGATCTTTACAGATTGTGCTAAAAGGTGTGTTTTTCTTCTTCTCGTGTGCTCCCCACGAAAACAGATCCAAGACAAACTCGAGGAAGCACCAGCGCCACTGCATCCAGTGCGAGTGGACAACGCGCCCCTACTGAAGGAGGTGATCGATCGCTGTAGCCTGTCGAGGAATCCGCACGCCCGTGAGCTCGCTCGCATCTTCCGCTATCCACACTTTCGCGCCCTGCTCGAAGCGCACGACGAGATCGGTGAGACGCAGCTCGAAAAGCTAAAGCATCCCCCCACGTCCGCCACGTCCAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGGGTCCGGTGTGGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGGGATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCAGCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCCGGGCGACGTCATACTGGAGGTGAACGGGGTGCCCGTGACCACGCCCGAGGAGCTGCAGGGCGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGAGATGAAATCTGCCCGCATCACCATGGCCGGTGGACAGGTAAAGAATGGAAGAAATTTAGACTCGGGCAAGAAGCTGACGTGTTATATGCGGGCCTTGTTCGATTACGATCCAAATGAGGACAATCTGTTACCGTGCAAGGAGATTGGGCTGTCGTTTTTGCGCGGTGACATACTGCAGATTATCAACGTGAAGGATCCAAACTGGTGGCAGGCGAAGCATGCGGGACGAGGATGGACCAACGGGGCTCATACCGTCCCAGGAGCTGGAGGAACGCCGACAGGCGTACGTACCTCCGGAGGCAGATTTCGTGCATA] [+] EMBL BM653952 [CCGATCTTTACAGATTGTGCTAAAAGGTGTGTTTTTCTTCTTCTCGTGTGCTCCCCACGAAAACAGATCCAAGACAAACTCGAGGAAGCACCAGCGCCACTGCATCCAGTGCGAGTGGACAACGCGCCCCTACTGAAGGAGGTGATCGATCGCTGTAGCCTGTCGAGGAATCCGCACGCCCGTGAGCTCGCTCGCATCTTCCGCTATCCACACTTTCGCGCCCTGCTCGAAGCGCACGACGAGATCGGTGAGACGCAGCTCGAAAAGCTAAAGCATCCCCCCACGTCCGCCACGTCCAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGGGTCCGGTGTGGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGGGATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCAGCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCCGGGCGACGTCATACTGGAGGTGAACGGGGTGCCCGTGACCACGCCCGAGGAGCTGCAGGGCGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGAGATGAAATCTGCCCGCATCACCATGGCCG ] [+] EMBL BM629917 [ ccgGCATCCCCTCACGTCCGCCACGTCCAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGGGTCCGGTGTAGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGGGATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCAGCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCCGGGCGACGTCATACTGGAGGTGAACGGGGTGCCTGTGACCACGCCCGAGGAGCTGCAGGGCGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGAGATGAAATCTGCCCGCATCACCATGGCCGGTGGACAGGTAAAGAATGGAAGAAATTTAGACTCGGGCAAGAAGCTGACGTGTTATATGCGGGCCTTGTTCGATTACGATCCAAATGAGGACAATCTGTTACCGTGCAAGGAGATTGGGCTGTCGTTTTTGCGCGGTGACATACTGCAGATTATCAACGTGAAGGATCCAAACTGGTGGCAGGCGAAGCATGCGGGACGAGGATGGACCAACGGGGCTCATACCGTCCCAGGAGCTGGAGGAACGCCGACAGGCGTACGTACCTCCGGAGGCAGATTTCGTGCATA] consensusID : consensus_4525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGGCTTGGAAGAGGTTTAGCAGCTTTGGAGTTATCCGGTTTCACTGTGTTCAAGACCATCGGGGGTTGATCCAAGACAAACTCGAGGAAGCACCAGCGCCACTGCATCCAGTGCGAGTGGACAACGCGCCCCTACTGAAGGAGGTGATCGATCGCTGTAGCCTGTCGAGGAATCCGCACGCCCGTGAGCTCGCTCGCATCTTCCGCTATCCACACTTTCGCGCCCTGCTCGAAGCGCACGACGAGATCGGTGAGACGCAGCTCGAAAAGCTAAAGCATCCCCCCACGTCCGCCACGTCCAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGGGTCCGGTGTGGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGGGATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCAGCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCCGGGCGACGTCATACTGGAGGTGAACGGGGTGCCCGTGACCACGCCCGAGGAGCTGCAGGGCGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGAGATGAAATCTGCCCG] [+] EMBL BM596350 [CCGGCTTGGAAGAGGTTTAGCAGCTTTGGAGTTATCCGGTTTCACTGTGTTCAAGACCATCGGGGGTTGATCCAAGACAAACTCGAGGAAGCACCAGCGCCACTGCATCCAGTGCGAGTGGACAACGCGCCCCTACTGAAGGAGGTGATCGATCGCTGTAGCCTGTCGAGGAATCCGCACGCCCGTGAGCTCGCTCGCATCTTCCGCTATCCACACTTTCGCGCCCTGCTCGAAGCGCACGACGAGATCGGTGAGACGCAGCTCGAAAAGCTAAAGCATCCCCCCACGTCCGCCACGTCCAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGGGTCCGGTGTGGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGGGATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCAGCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCCGGGCGACGTCATACTGGAGGTGAACGGGGTGCCCGTGACCACGCCCGAGGAGCTGCAGGGCGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGAGATGAAATCTGCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4525#0 CCGATCTTTACAGATTGTGCTAAAAGGTGTGTTTTTCTTCTTCTCGTGTGCTC----CCC 56 consensus_4525#1 CCGGCTTGGAAGAGGTTTAGCAGCTTTGGAGTTATCCGGTTTCAC-TGTGTTCAAGACCA 59 *** * * * * * * *** * * *** * **** ** ** consensus_4525#0 ACGAAAACAGATCCAAGACAAACTCGAGGAAGCACCAGCGCCACTGCATCCAGTGCGAGT 116 consensus_4525#1 TCGGGGGTTGATCCAAGACAAACTCGAGGAAGCACCAGCGCCACTGCATCCAGTGCGAGT 119 ** *************************************************** consensus_4525#0 GGACAACGCGCCCCTACTGAAGGAGGTGATCGATCGCTGTAGCCTGTCGAGGAATCCGCA 176 consensus_4525#1 GGACAACGCGCCCCTACTGAAGGAGGTGATCGATCGCTGTAGCCTGTCGAGGAATCCGCA 179 ************************************************************ consensus_4525#0 CGCCCGTGAGCTCGCTCGCATCTTCCGCTATCCACACTTTCGCGCCCTGCTCGAAGCGCA 236 consensus_4525#1 CGCCCGTGAGCTCGCTCGCATCTTCCGCTATCCACACTTTCGCGCCCTGCTCGAAGCGCA 239 ************************************************************ consensus_4525#0 CGACGAGATCGGTGAGACGCAGCTCGAAAAGCTAAAGCATCCCCCCACGTCCGCCACGTC 296 consensus_4525#1 CGACGAGATCGGTGAGACGCAGCTCGAAAAGCTAAAGCATCCCCCCACGTCCGCCACGTC 299 ************************************************************ consensus_4525#0 CAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGG 356 consensus_4525#1 CAGCCCGGGTGGCAACAGTCAGTACCACCAGGCCAGCCCATCCAGCGAGACAGTCGACGG 359 ************************************************************ consensus_4525#0 GTCCGGTGTGGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGG 416 consensus_4525#1 GTCCGGTGTGGAGCTGCTCACCATCAACGATATGCCCGGGGAAACGATCAAGATGGTCGG 419 ************************************************************ consensus_4525#0 GATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCA 476 consensus_4525#1 GATCCGGAGAAATCCGGACGAACCGCTCGGCCTGACGGTGGAGGTCGACGAGCACAATCA 479 ************************************************************ consensus_4525#0 GCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCC 536 consensus_4525#1 GCTGGTGGTGGCCCGAATCATCGCGGGCGGCATGATCGATCGGCAGGGGCTGCTCCATCC 539 ************************************************************ consensus_4525#0 GGGCGACGTCATACTGGAGGTGAACGGGGTGCCCGTGACCACGCCCGAGGAGCTGCAGGG 596 consensus_4525#1 GGGCGACGTCATACTGGAGGTGAACGGGGTGCCCGTGACCACGCCCGAGGAGCTGCAGGG 599 ************************************************************ consensus_4525#0 CGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGA 656 consensus_4525#1 CGAGATCTCGGTCGCGAAGGAGTCGGTAACGTTGAAGATTGGGCCGAGCGTCGAGGAGGA 659 ************************************************************ consensus_4525#0 GATGAAATCTGCCCGCATCACCATGGCCGGTGGACAGGTAAAGAATGGAAGAAATTTAGA 716 consensus_4525#1 GATGAAATCTGCCCG--------------------------------------------- 674 *************** consensus_4525#0 CTCGGGCAAGAAGCTGACGTGTTATATGCGGGCCTTGTTCGATTACGATCCAAATGAGGA 776 consensus_4525#1 ------------------------------------------------------------ consensus_4525#0 CAATCTGTTACCGTGCAAGGAGATTGGGCTGTCGTTTTTGCGCGGTGACATACTGCAGAT 836 consensus_4525#1 ------------------------------------------------------------ consensus_4525#0 TATCAACGTGAAGGATCCAAACTGGTGGCAGGCGAAGCATGCGGGACGAGGATGGACCAA 896 consensus_4525#1 ------------------------------------------------------------ consensus_4525#0 CGGGGCTCATACCGTCCCAGGAGCTGGAGGAACGCCGACAGGCGTACGTACCTCCGGAGG 956 consensus_4525#1 ------------------------------------------------------------ consensus_4525#0 CAGATTTCGTGCATA 971 consensus_4525#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||