These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence [CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGTTAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTTAAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTATTGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCCCCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAAGCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGACATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACACATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCTCGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGTGGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACCGCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGTGGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG] [+] EMBL BM581605 [CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGTTAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTTAAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTATTGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCCCCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAAGCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGACATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACACATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCTCGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGTGGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACCGCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGA ] [+] EMBL BM575053 [ ccgGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGTTAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTTAAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTATTGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCCCCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAAGCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGACATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACACATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCTCGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGTGGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACCGCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGTGGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG] consensusID : consensus_4543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAATTGTTGGAAATGAATTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCCCCAGCGG] [+] EMBL BX629285 [CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAATTGTTGGAAATGAATTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCCCCAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4543#0 CCGAAACATTTCATAACAGCTCATGTTTTTGCTAGAGTGTGAAATAATCAATGAAAAAGT 60 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 TAATAGAAAAGTGTTTCCCCGCCCTTAAGTTACCATAACACATTGATAAGCTGTTGGTTT 120 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 AAGTAGTAATACACATACAAAATTTCCGATGTTACACATACGCTTTCTAGCGAGACGTAT 180 consensus_4543#1 -------------CATACAAAATTTCCGATGTNACACATACGCNTTCTAGCGAGACGAAT 47 ******************* ********** ************* ** consensus_4543#0 TGTTGGAAATGAATTGCTCCAGTCAAGGCTGTGTGCCGCCGCCCCGACTACAATCCTGCC 240 consensus_4543#1 TGTTGGAAATGAATTGCTCCAGGCACGGCTGCGTTCCGCCGGCCCGGCTACAAACCNGCC 107 ********************** ** ***** ** ****** **** ****** ** *** consensus_4543#0 CCAGCGACAGCTACAGTTCAGTGCCTTACTTAGCAAGCGACGGAAAACGGCCGAAGAGAA 300 consensus_4543#1 CCAGCGG----------------------------------------------------- 114 ****** consensus_4543#0 GCATGCGGTCGAGTTTGCGCCGAAGAAAAAGAACAAACCGCAAACGAGCGGCGTGGTGGA 360 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 CATTTGGCGCAACATGACGGTGGCCGACCTGGCCCGTTCGTGCCAGCTAGAGCTGGAACA 420 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 CATCCAGGAGGTGATGCTGTACGTGAAAGGCGCCGGCAGTATCGATGCAACTGCCCGCCT 480 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 CGAGGACCCGAAGGTGATCAAAGACATTGCGGCCAAGTGTGGCTTGAAGACGAAGATCGT 540 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 GGCCGCCCCGGTGGATGAGTCGGAGGAAGTGCTGAAGGACCGCGATGTGGTGCCGAGACC 600 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 GCCGCCAGCGCCCGAAAACCTGAAAGAGCGGCCACCGGTCGTGACCGTGATGGGGCACGT 660 consensus_4543#1 ------------------------------------------------------------ consensus_4543#0 GGACCACGGCAAGACGACGCTGCTCGATTCGCTGCGGGGAGCGTCGGTGGCGGCGG 716 consensus_4543#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||