These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence [CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTACAAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATTGCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATCCTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGCGCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCGCTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGAAAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAACGCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGTCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAA--------ACACACACACTCAGAGACAGCTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATTGTCCTACCGCTCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACATT] [+] EMBL BX628298 [CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTACAAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATTGCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATCCTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGCGCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCGCTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGAAAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAACGCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGTCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAA ACACACACACTCAGAGACAGCTCAATGTCGACAAAAT ] [+] EMBL BX606223 [ CCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATCCTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGATGGCCTGTGGGATACGATGAGCGCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCGCTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGAAAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAACGCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTCCCGAAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTCCGAAATTGTCCCACTTGATGGCGGGAGGGTGAAGGTCCCCCCCGTGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATTGTCCTACCGCTCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACATT] consensusID : consensus_4547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATATGTCCTACCGCTCAACTCAACAAGCGTGCCCGTGTGTTCCGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCACACTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTTAAAAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT] [+] EMBL BM653827 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCATGCTGTCACTCCCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGACTCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAGACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACACACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCGCAAATATGTCCTACCGCTCAACTCAACAAGCGTGCCCGTGTGTTCCGGTAACGCGTTGTGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCACACTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTTAAAAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4547#0 CGCGGTGAACGGTTGCTCGGTCAGCTGGCACCACTGCGTGCGATGGGTGACTTCCGCTAC 60 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 AAGTGGTCACGCGAGCAGCTCGAGCAGCTGGTCGTGCCACAGTTCGGGGAGCAGGTCATT 120 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 GCACCGTACTACCTCACACCGCCCTATCTGAGCGCGTGCCCCGAGATTACGCATCACATC 180 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 CTAACGCCGCGCGACAAGTTCCTGATCATCGCGAGCGACGGCCTGTGGGATACGATGAGC 240 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 GCCATGCAGACGGTGCATCTGGTCGGGGAGCACATGTACGGGAAGGCGTTCCTGCAGCCG 300 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 CTCACTCTCCCCAAGCAGGACATTACGCTCGGGGAGATCAGTCAAATGTTAACCACTCGA 360 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 AAGGCGGGTCTGCAGAAGAAACCGCTCGATCGCAATGCGGCGACACATCTGATCCGCAAC 420 consensus_4547#1 ----------------------------------------------------CCGCCCAC 8 * * ** consensus_4547#0 GCACTCGGCGGCACGGAGTACGGCGTGGAGCACTCAAAGCTGTCGCACATGCTGTCACTC 480 consensus_4547#1 GCGTCCGCCCACGC---GTCCGCCCACGCGTCCGCCCACGCGTC-CGCATGCTGTCACTC 64 ** ** * * * ** ** * * * * * * *** * ************* consensus_4547#0 CCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGAC 540 consensus_4547#1 CCGCAGGACATTGTGAGACTGTTCCGGGACGACATTACCATCACGGTGGTGTACTTTGAC 124 ************************************************************ consensus_4547#0 TCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAG 600 consensus_4547#1 TCGGAATATCTGCGAAATTGTCCCACTTGATGGCGGGAGGGTGATGGTCCCCGCCGTGAG 184 ************************************************************ consensus_4547#0 TCGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACAC---------- 650 consensus_4547#1 ACGGACAGTGCTTCATAGGAAACCGCCGGAAGCATTTAAAACACACACACACACACACAC 244 ************************************************* consensus_4547#0 ------TCAGAGACAGCTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCG 704 consensus_4547#1 ACACACTCAGAGACAGTTCAATGTCGACAAAATGGTAAAGGCTGGCCCCTTTTTCCCGCG 304 ********** ******************************************* consensus_4547#0 CAAAT-TGTCCTACCGCTCAACTCAACAAAGCGTGCCCGTGTGTTCCTGGTAACGCGTTG 763 consensus_4547#1 CAAATATGTCCTACCGCTCAACTCAACAA-GCGTGCCCGTGTGTTCC-GGTAACGCGTTG 362 ***** *********************** ***************** ************ consensus_4547#0 TGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAGCAGAGAACGCACACACTCACA 823 consensus_4547#1 TGTGTCCTAATGAATCATTTTATCGCAACAGCGTTACAACAGAGGACGCACACACTCACA 422 ************************************** ***** *************** consensus_4547#0 TT---------------------------------------------------------- 825 consensus_4547#1 CTAGGTGCTTGTTTTTCTTTATTCCCTTGTATTTATGTTTCCGTTTATATGTTTTTTTAA 482 * consensus_4547#0 --------------------------------------- consensus_4547#1 AAAGGAATTTAAAAGGCCAATGAGTTGATCAACACGAAT 521 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||