These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 823 fasta sequence [CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA] [+] EMBL BX467554 [CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA] consensusID : consensus_4548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCTACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGATCCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACCGCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTATTTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGACGAAAATCTATCAAATCGAAACTCTGAT] [+] EMBL BX625826 [TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCTACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGATCCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACCGCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTATTTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGACGAAAATCTATCAAATCGAAACTCTGAT] consensusID : consensus_4548#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCCGTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGATCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAANTGTGGATGAGGTG] [+] EMBL BX468147 [GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCCGTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGATCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAANTGTGGATGAGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4548#0 ------------------------------------------------------------ consensus_4548#2 GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCC 60 consensus_4548#1 TGCCCATGTCG--ATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGC 58 consensus_4548#0 ------------------------------------------------------------ consensus_4548#2 GTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGA 120 consensus_4548#1 ACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTC 118 consensus_4548#0 -CAGAATTCG-GCACGA---GGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCT 55 consensus_4548#2 TCGCGGTCCA-ATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCT 179 consensus_4548#1 CTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCG-GTTCGTCGCACAACCTCG 177 * * ***** * * ** * * ** * * * consensus_4548#0 GTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGG-TCATGGGCTGCCTGAAGGGCA 114 consensus_4548#2 GTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCA 239 consensus_4548#1 CCTACAGCTCGTACTATCCCAGCTCGA-GCGGTTCCAGCTCGTACACGGCGTACAACGCT 236 * **** **** * * * * ** * * ** * * ** consensus_4548#0 AGGTGCTGCTCTACCTGGACGGTATGCTT-GGACTGCGCGAGGAGGAGGCACGCGCCTTC 173 consensus_4548#2 AGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTC 299 consensus_4548#1 GGATCCAGCAGCTCCTCGGCCGT-TGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTC 295 * * * ** *** * * ** ** ** * ** * * * ** ** consensus_4548#0 GA--GGAGCGTAAT-GTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACC 230 consensus_4548#2 GA--GGAGCGTAANTGTGGATGAGGTG--------------------------------- 324 consensus_4548#1 GTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGC 355 * ***** * * ** * ** consensus_4548#0 CACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTC 290 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 GTACCGCCCCGCAC-CAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGC 414 consensus_4548#0 TGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAG- 349 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 TATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGC 474 consensus_4548#0 -ATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCT 408 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 GACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAA 534 consensus_4548#0 CATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAA 468 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 TGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGG 594 consensus_4548#0 GAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCT 528 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 AACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCT 654 consensus_4548#0 GCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGT 588 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 GGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCG 714 consensus_4548#0 CCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGT 648 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 ACCTATTTATTGTCTCCTAATGCGAA-ACGTTATTTATTGAATGAGGAATAATAATAAAC 773 consensus_4548#0 CGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTA 708 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 AAATCGACGAAAATCTATCAAATCGAAACTCTGAT------------------------- 808 consensus_4548#0 CACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTT 768 consensus_4548#2 ------------------------------------------------------------ consensus_4548#1 ------------------------------------------------------------ consensus_4548#0 CCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA 823 consensus_4548#2 ------------------------------------------------------- consensus_4548#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||