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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 823 fasta sequence
[CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA]
[+] EMBL BX467554 [CAGAATTCGGCACGAGGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAATGTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACCCACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTCTGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAGATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCTCATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAAGAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGTCGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTACACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTTCCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA]
consensusID : consensus_4548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence
[TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCTACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGATCCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACCGCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTATTTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGACGAAAATCTATCAAATCGAAACTCTGAT]
[+] EMBL BX625826 [TGCCCATGTCGATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTCCTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCGGTTCGTCGCACAACCTCGCCTACAGCTCGTACTATCCCAGCTCGAGCGGTTCCAGCTCGTACACGGCGTACAACGCTGGATCCAGCAGCTCCTCGGCCGTTGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTCGTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGCGTACCGCCCCGCACCAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGCTATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGCGACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAATGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGGAACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCTGGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCGACCTATTTATTGTCTCCTAATGCGAAACGTTATTTATTGAATGAGGAATAATAATAAACAAATCGACGAAAATCTATCAAATCGAAACTCTGAT]
consensusID : consensus_4548#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCCGTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGATCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAANTGTGGATGAGGTG]
[+] EMBL BX468147 [GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCCGTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGATCGCGGTCCAATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCTGTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCAAGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTCGAGGAGCGTAANTGTGGATGAGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4548#0 ------------------------------------------------------------
consensus_4548#2 GGCAAGAATCGGCACGNTGAACTTCTTTCGTTTAGACAAAACNGATGCCGACTCGAACCC 60
consensus_4548#1 TGCCCATGTCG--ATGATGCCCNTGATGATGCCCCAGGCTCCGGCTGCTGAGTATGGTGC 58
consensus_4548#0 ------------------------------------------------------------
consensus_4548#2 GTTCGCTGGTGTTGGTGGTTGTGGTGGCGCTGGTTGCGGGTGTCGCCTCCGGTGCCTCGA 120
consensus_4548#1 ACCGGTGCCTGCTACCTCTACGCCGGCCTCCAGCTACGAACCATCGTCCTGGGACTCCTC 118
consensus_4548#0 -CAGAATTCG-GCACGA---GGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCT 55
consensus_4548#2 TCGCGGTCCA-ATCTGGTCGAGGAGGAGCGACCAAGGATCGCATCCAGCGAGGAGCTGCT 179
consensus_4548#1 CTCCGGCCCGTACTCGCGCCACTGGGAGCCGTCGACTTCCG-GTTCGTCGCACAACCTCG 177
* * ***** * * ** * * ** * * *
consensus_4548#0 GTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGG-TCATGGGCTGCCTGAAGGGCA 114
consensus_4548#2 GTCGTCGATCGTGAACGAGTGCTTCGACGGTGCCTCGGGTCATGGGCTGCCTGAAGGGCA 239
consensus_4548#1 CCTACAGCTCGTACTATCCCAGCTCGA-GCGGTTCCAGCTCGTACACGGCGTACAACGCT 236
* **** **** * * * * ** * * ** * * **
consensus_4548#0 AGGTGCTGCTCTACCTGGACGGTATGCTT-GGACTGCGCGAGGAGGAGGCACGCGCCTTC 173
consensus_4548#2 AGGTGCTGCTCTACCTGGACGGTATGCTTTGGACTGCGCGAGGAGGAGGCACGCGCCTTC 299
consensus_4548#1 GGATCCAGCAGCTCCTCGGCCGT-TGGTTCCGGTAGCTCTTCCTCTTCCTCCTCTCCCTC 295
* * * ** *** * * ** ** ** * ** * * * ** **
consensus_4548#0 GA--GGAGCGTAAT-GTGGATGAGGTGATCTTCGACCGCGTCGGACGTGTGCTGGCCACC 230
consensus_4548#2 GA--GGAGCGTAANTGTGGATGAGGTG--------------------------------- 324
consensus_4548#1 GTCCGGAGCTTCATCGTCGTCCTCGTCGTCGTCGAATGCAGCGCACGCTTACTAGAAAGC 355
* ***** * * ** * **
consensus_4548#0 CACGAGTTCCGCGTTCAGCTGCCGGAAGATACCGTCGTCAGCTACCGCGCCGATAGGGTC 290
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 GTACCGCCCCGCAC-CAGTCACGTAGACCCGTACACCAAAGCGAAGACGCAAACGTAGGC 414
consensus_4548#0 TGGACATTGACGTGGTGCCGGCAGGTCTCGCTACCGTGTTGCTGCTGCTGAAGCTGAAG- 349
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 TATCCTCCCCACCGGGAGTCGTACTTCGAGCCATCTTTTTCTTTCTTCTAAGTCAACAGC 474
consensus_4548#0 -ATGAAGGCGCTGATGCCGATCTTCCTCGGGCTGATCGGACTGAAGGCGATGAAGGCGCT 408
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 GACTCAAAAAGTGAAACAACCTTACCTGGAAGGTTTCGAACGAACAGTGGTACCGTCCAA 534
consensus_4548#0 CATCCTGTCCAAGCTGGCGATCACGCTGGTGCTCGGCTTCCTGGTTGCCCAGCTGGTGAA 468
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 TGGTCCATCGCCACTATCCCGTGATTGGACGACTGTATTCCAATCAGTTACTATCGGAGG 594
consensus_4548#0 GAAGTCCGGCCTGGGCATGCCCATGTCGATATGCCCATGATGATGCCCCAGGCTCCGGCT 528
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 AACTGTGGCGATGGTTGTTGACGAAGGGTCCACCAAATTTGAGTAAATTCTGTGAACGCT 654
consensus_4548#0 GCTGAGTATGGTGCACCGGTGCCTGCTACCTCTACGCCGGCTCCAGCTACGAACCATCGT 588
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 GGTTGGCCTGTGGGAGGGTTCATAGCTTAAGCCCTTTTCGTTTTCTTTCCCATCCCTGCG 714
consensus_4548#0 CCTGGGACTCCTCCTCCGGCCGTACTCGCGCCACTTGGGAGCCGTCGACTTCCGGTTCGT 648
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 ACCTATTTATTGTCTCCTAATGCGAA-ACGTTATTTATTGAATGAGGAATAATAATAAAC 773
consensus_4548#0 CGCACAAACCTCGGCCTACAGGCTCGTACTATCCCAGCTCGAGCGGGTTCCAGCTCCGTA 708
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 AAATCGACGAAAATCTATCAAATCGAAACTCTGAT------------------------- 808
consensus_4548#0 CACGGGGGTACAACGGCTTGGATCCAGGCAAGTCCNTCGGCGTTGGTTCCGGTAGNTNTT 768
consensus_4548#2 ------------------------------------------------------------
consensus_4548#1 ------------------------------------------------------------
consensus_4548#0 CCTCTTCCTCCTCTCCTTCGTCCGGAGCGTTTAATCGTAGACTCGACGTCTCAAA 823
consensus_4548#2 -------------------------------------------------------
consensus_4548#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||