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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence
[CCGCTCCGCTAACATTAGCATAGCATCGTTCTTGATGGAGTGTCTCTTTTTCTGCACAAGTTTGCACATGTTCACACAAGTTCGTACGATACACGGTTCAAATCACGCTTGTTGGTGAAAGATCATACAGCAACAGTAGGAACAGGTTTGGTTTAATCCAACGGCACATAGCTGCGCGGTCTGCTTGAGAGTTGGTTTTTTTTTTCGTTGTTCGCCCTCTCGCCCTGTTCATTGTCTTGCTGGTAGTTCGTGACATCGGTGGGCTGCTGAGCTGTGTTTGTGAATGGAAATGATGCATAAAGCATCATGAAGCGGACCAGCAGCGGTGGTCAGAACAGGGCAACAGTGGTAATAGAAATTGGTTCGTCTTAAACAGTGTTTCGGTTTGTTTCGACGTGAATTGCTGTGAAAAAGTGTGTTTTTTTTTAGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATCACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCGCAGTAGGAGGGATCCCTTTTTTCTTTGAACTGGACATTGGGTACCTCCCCCGCCTAGCATCCCCGCCAAGAAATGGACATCTCGCAAACATCCCCTTCAAGACGTAGCAGTATTCCGATACCGAAACGGAAAACATCGCTCCACCTGTACATTGCCGGTGGCGGTGGTTCATCTTCAAACTCATCGTCGAACGTCGGTTCGGCTTCGGCGTCGATAAACGACGATGAACCTTCGTTCACGCGCAGCATGCTCGGTTCATTCGTACAGGCGGATTCATCGCCCAGTGGCGTTGGTGTTGCGGGTGCAGGAAGCGGCACAACGGTCAGCACGCCGTCCGAGTACGTTCAACTAAAGGAAAGCCACAACCGTCTGATGGAAAAGTGCGAACATTTGACCAAACGCAACGCCCAGCTTGAAACATCGAACGAACAGCTCAACTACAATGTAAAGCAGCTCGTTGGAGATCTGGAAAACTCGCAGCGTGTACTAACGGACTTTAC]
[+] EMBL BM652325 [CCGCTCCGCTAACATTAGCATAGCATCGTTCTTGATGGAGTGTCTCTTTTTCTGCACAAGTTTGCACATGTTCACACAAGTTCGTACGATACACGGTTCAAATCACGCTTGTTGGTGAAAGATCATACAGCAACAGTAGGAACAGGTTTGGTTTAATCCAACGGCACATAGCTGCGCGGTCTGCTTGAGAGTTGGTTTTTTTTTTCGTTGTTCGCCCTCTCGCCCTGTTCATTGTCTTGCTGGTAGTTCGTGACATCGGTGGGCTGCTGAGCTGTGTTTGTGAATGGAAATGATGCATAAAGCATCATGAAGCGGACCAGCAGCGGTGGTCAGAACAGGGCAACAGTGGTAATAGAAATTGGTTCGTCTTAAACAGTGTTTCGGTTTGTTTCGACGTGAATTGCTGTGAAAAAGTGTGTTTTTTTTTAGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATCACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCGCAGTAGGAGGGATCCCTTTTTTCTTTGAACTGGACATTGGGTACCTCCCCCGCCTAGCATCCCCGCCAAGAAATGGACAT ]
[+] EMBL BM640175 [ ccGAAATTGGTTCGTCTTAAGCAGTGTTTCGGTTTATTTCGACGTGAATTGCTGTAAAAAAGTGTGTTTTTTTGAAGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATCACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCGCAGT AGGGATCCCTTTTTTCTTTGAACTGGACATTGGGTACTTCCCTCGCCTAGCATCCCCG CAAAAAATGGACATCTCGCAAACATCCCCTTCAAGACGTAGCAGTATTCCGATACCGAAACGGAAAACATCGCTCCACCTGTACATTGCCGGTGGCGGTGGTTCATCTTCAAACTCATCGTCGAACGTCGGTTCGGCTTCGGCGTCGATAAACGACGATGAACCTTCGTTCACGCGCAGCATGCTCGGTTCATTCGTACAGGCGGATTCATCGCCCAGTGGCGTTGGTGTTGCGGGTGCAGGAAGCGGCACAACGGTCAGCACGCCGTCCGAGTACGTTCAACTAAAGGAAAGCCACAACCGTCTGATGGAAAAGTGCGAACATTTGACCAAACGCAACGCCCAGCTTGAAACATCGAACGAACAGCTCAACTACAATGTAAAGCAGCTCGTTGGAGATCTGGAAAACTCGCAGCGTGTACTAACGGACTTTAC]
consensusID : consensus_4552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCGCGACATCGGTGGGCTGCTGAGCTGTGTTTGTGAATGGAAATGATGCATAAAGCATCATGAAGCGGACCAGCAGCGGTGGTCAGAACAGGGCAACAGTGGTAATAGAAATTGGTTCGTCTTAAACAGTGTTTCGGTTTGTTTCGACGTGAATTGCTGTGAAAAAGTGTGTTTTTTTAAGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATCACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCGGCATAAAGCGCAGTAGGAGGGATCCCTTTTTTCTTTGAACTGCACATTGGGTACCTCCCTCGCCTAGCATCCCCGCCAAAAAATGGACATCTCGCAAACATCCCCTTCAAGACGTAGCAGCATTCCGATACCGAAACGGAAAACATCGCTCCACCTGTACATTGCCGGTGGCGGTGGTTCATCTTCAAACTCATCGTCGAACGTCGGTTCGGCTTCGGCTTCGATAAACGACGATGAACCTTCGTTCACGCGCAGCATGCTCGTTTCATTCGTACAAGCGGAATCATCGCCCGGTGGCGTTTGGTGTTGCGGGTGCAGGAAGCGGCACAACAGTCAGCACGCCGGTCCGAGTAC]
[+] EMBL BM596124 [CCGCGCGACATCGGTGGGCTGCTGAGCTGTGTTTGTGAATGGAAATGATGCATAAAGCATCATGAAGCGGACCAGCAGCGGTGGTCAGAACAGGGCAACAGTGGTAATAGAAATTGGTTCGTCTTAAACAGTGTTTCGGTTTGTTTCGACGTGAATTGCTGTGAAAAAGTGTGTTTTTTTAAGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATCACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCGGCATAAAGCGCAGTAGGAGGGATCCCTTTTTTCTTTGAACTGCACATTGGGTACCTCCCTCGCCTAGCATCCCCGCCAAAAAATGGACATCTCGCAAACATCCCCTTCAAGACGTAGCAGCATTCCGATACCGAAACGGAAAACATCGCTCCACCTGTACATTGCCGGTGGCGGTGGTTCATCTTCAAACTCATCGTCGAACGTCGGTTCGGCTTCGGCTTCGATAAACGACGATGAACCTTCGTTCACGCGCAGCATGCTCGTTTCATTCGTACAAGCGGAATCATCGCCCGGTGGCGTTTGGTGTTGCGGGTGCAGGAAGCGGCACAACAGTCAGCACGCCGGTCCGAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4552#0 CCGCTCCGCTAACATTAGCATAGCATCGTTCTTGATGGAGTGTCTCTTTTTCTGCACAAG 60
consensus_4552#1 ------------------------------------------------------------
consensus_4552#0 TTTGCACATGTTCACACAAGTTCGTACGATACACGGTTCAAATCACGCTTGTTGGTGAAA 120
consensus_4552#1 ------------------------------------------------------------
consensus_4552#0 GATCATACAGCAACAGTAGGAACAGGTTTGGTTTAATCCAACGGCACATAGCTGCGCGGT 180
consensus_4552#1 ------------------------------------------------------------
consensus_4552#0 CTGCTTGAGAGTTGGTTTTTTTTTTCGTTGTTCGCCCTCTCGCCCTGTTCATTGTCTTGC 240
consensus_4552#1 ------------------------------------------------------------
consensus_4552#0 TGGTAGTTCGTGACATCGGTGGGCTGCTGAGCTGTGTTTGTGAATGGAAATGATGCATAA 300
consensus_4552#1 -----CCGCGCGACATCGGTGGGCTGCTGAGCTGTGTTTGTGAATGGAAATGATGCATAA 55
** *************************************************
consensus_4552#0 AGCATCATGAAGCGGACCAGCAGCGGTGGTCAGAACAGGGCAACAGTGGTAATAGAAATT 360
consensus_4552#1 AGCATCATGAAGCGGACCAGCAGCGGTGGTCAGAACAGGGCAACAGTGGTAATAGAAATT 115
************************************************************
consensus_4552#0 GGTTCGTCTTAAACAGTGTTTCGGTTTGTTTCGACGTGAATTGCTGTGAAAAAGTGTGTT 420
consensus_4552#1 GGTTCGTCTTAAACAGTGTTTCGGTTTGTTTCGACGTGAATTGCTGTGAAAAAGTGTGTT 175
************************************************************
consensus_4552#0 TTTTTTTAGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATC 480
consensus_4552#1 TTTTTA-AGGAGCAACAGTTAAAAAAGCGAGGAATCTATCAAATAACCAATAGAAACATC 234
***** *****************************************************
consensus_4552#0 ACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCG----- 535
consensus_4552#1 ACCAGCTACGGAACATACAACAGGTGTTTTGAAGACGTTTCGCCTAGATAAAGCGGCATA 294
*******************************************************
consensus_4552#0 -----CAGTAGGAGGGATCCCTTTTTTCTTTGAACTGGACATTGGGTACCTCCCCCGCCT 590
consensus_4552#1 AAGCGCAGTAGGAGGGATCCCTTTTTTCTTTGAACTGCACATTGGGTACCTCCCTCGCCT 354
******************************** **************** *****
consensus_4552#0 AGCATCCCCGCCAAGAAATGGACATCTCGCAAACATCCCCTTCAAGACGTAGCAGTATTC 650
consensus_4552#1 AGCATCCCCGCCAAAAAATGGACATCTCGCAAACATCCCCTTCAAGACGTAGCAGCATTC 414
************** **************************************** ****
consensus_4552#0 CGATACCGAAACGGAAAACATCGCTCCACCTGTACATTGCCGGTGGCGGTGGTTCATCTT 710
consensus_4552#1 CGATACCGAAACGGAAAACATCGCTCCACCTGTACATTGCCGGTGGCGGTGGTTCATCTT 474
************************************************************
consensus_4552#0 CAAACTCATCGTCGAACGTCGGTTCGGCTTCGGCGTCGATAAACGACGATGAACCTTCGT 770
consensus_4552#1 CAAACTCATCGTCGAACGTCGGTTCGGCTTCGGCTTCGATAAACGACGATGAACCTTCGT 534
********************************** *************************
consensus_4552#0 TCACGCGCAGCATGCTCGGTTCATTCGTACAGGCGGATTCATCGCCCAGTGGCGTT-GGT 829
consensus_4552#1 TCACGCGCAGCATGCTCGTTTCATTCGTACAAGCGGAATCATCGCCCGGTGGCGTTTGGT 594
****************** ************ ***** ********* ******** ***
consensus_4552#0 GTTGCGGGTGCAGGAAGCGGCACAACGGTCAGCACGCCG-TCCGAGTACGTTCAACTAAA 888
consensus_4552#1 GTTGCGGGTGCAGGAAGCGGCACAACAGTCAGCACGCCGGTCCGAGTAC----------- 643
************************** ************ *********
consensus_4552#0 GGAAAGCCACAACCGTCTGATGGAAAAGTGCGAACATTTGACCAAACGCAACGCCCAGCT 948
consensus_4552#1 ------------------------------------------------------------
consensus_4552#0 TGAAACATCGAACGAACAGCTCAACTACAATGTAAAGCAGCTCGTTGGAGATCTGGAAAA 1008
consensus_4552#1 ------------------------------------------------------------
consensus_4552#0 CTCGCAGCGTGTACTAACGGACTTTAC 1035
consensus_4552#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||