cluster # 456

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Anopheles gambiae
cluster # 456 cluster # 456 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_456#0 length = 162 sequences # 1

consensus_456#1 length = 137 sequences # 1

consensusID : consensus_456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [CTCTATGGACGCGGGAGTACANCANACAGANCTNCANCTANCTGGAAGNACANTTTGAANTTTTCGNTTGNTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCATTTGAAAGATCNGAGAGTTTNGCCCCNAGNANAAAAAAAAAA]

[+] EMBL CF541594             [CTCTATGGACGCGGGAGTACANCANACAGANCTNCANCTANCTGGAAGNACANTTTGAANTTTTCGNTTGNTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCATTTGAAAGATCNGAGAGTTTNGCCCCNAGNANAAAAAAAAAA]




>consensus_456#0
CTCTATGGACGCGGGAGTACANCANACAGANCTNCANCTANCTGGAAGNACANTTTGAAN
TTTTCGNTTGNTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCA
TTTGAAAGATCNGAGAGTTTNGCCCCNAGNANAAAAAAAAAA

consensusID : consensus_456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [GGGGAGTAACAACAAGACTCAACTACTGGAAGACATTTGAATTTTCGTTGTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCATTTGAAAGATCGAGAGTTTGCCCTAAATAAAAAAAAAA]

[+] EMBL CF541919             [GGGGAGTAACAACAAGACTCAACTACTGGAAGACATTTGAATTTTCGTTGTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCATTTGAAAGATCGAGAGTTTGCCCTAAATAAAAAAAAAA]




>consensus_456#1
GGGGAGTAACAACAAGACTCAACTACTGGAAGACATTTGAATTTTCGTTGTTTCCGAGGC
AATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCATTTGAAAGATCGAGAGTTTGC
CCTAAATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_456#0      CTCTATGGACGCGGGAGTACANCANACAGANCTNCANCTANCTGGAAGNACANTTTGAAN 60
consensus_456#1      -------------GGGGAGTAACAACAAGAC--TCAACTACT--GGAAGACATTT--GAA 41
                                  ** *   * **   ***    ** ***    * *  *** **   * 

consensus_456#0      TTTTCGNTTGNTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCA 120
consensus_456#1      TTTTCGTT--GTTTCCGAGGCAATCGGCTTAGTGCGTGGTATATACTAATGCATCTTTCA 99
                     ****** *   *************************************************

consensus_456#0      TTTGAAAGATCNGAGAGTTTNGCCCCNAGNANAAAAAAAAAA 162
consensus_456#1      TTTGAAAGATCG-AGAGTTTG-CCCTAAATAAAAAAAAAA-- 137
                     ***********  *******  ***  *  * ********