These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAATACAACAATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATCGAACTCGAGAATCTCAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAATGGCAGTTCGAGCAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAGGAGTCAATCGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTAAATTTAATCCAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTTAATCTAAACGTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACATATGTTGCACCATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATCATTGCCGGGGTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCTTCACACGTTGTTGCACGTGAGCTGCTGCAAACGTGCT] [+] EMBL BX468040 [GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAATACAACAATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATCGAACTCGAGAATCTCAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAATGGCAGTTCGAGCAATG ] [+] EMBL BX625778 [ GTGAAGATGCGCTGCTTGTGATCGAACTCGAGAATCTCAACACGGCAACGGACGATATTAATAAGCTCGAGATTGAACTAGAGGAAGCCAACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAAAGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGGTGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACGCGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAA CTCGCACGAATGGCAGTTCGA CAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAGGAGTCAATCGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTAAATTTAATCCAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTTAATCTAAACGTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACATATGTTGCACCATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATCATTGCCGGGGTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCTTCACACGTTGTTGCACGTGAGCTGCTGCAAACGTGCT] consensusID : consensus_4560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACTGGAGGAACGCTACCGAAGGAGCATACAGAAGTCGCGGCCCTACTTCGACGAGAAGCAGCTGTGCCAGGAGCAGCTGGAAGCGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCAGGCGGCCAAGAGCGCCTACAGTACCGCGCTTCGCAATCTGGAAAAGATTAGCGAGGAGATACACGAGCAGCGAGGCGATCTTAGCCAGGCCGCACCGTCCGGCCCCCGGGAACCGGGCGTCGGGGCCGAGCTGGCTAACATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTCCAGCAACAACCTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCCGGACATTTCGAGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGCGACCAGCTCGGCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACTACTCCACCATGACGCTGCACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCACCGTCGATCAGGATGACGAT] [+] EMBL BM594405 [CCGGTTAAACCACGCTACTATTAAGGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAAGGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACTGGAGGAACGCTACCGAAGGAGCATACAGAAGTCGCGGCCCTACTTCGACGAGAAGCAGCTGTGCCAGGAGCAGCTGGAAGCGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCAGGCGGCCAAGAGCGCCTACAGTACCGCGCTTCGCAATCTGGAAAAGATTAGCGAGGAGATACACGAGCAGCGAGGCGATCTTAGCCAGGCCGCACCGTCCGGCCCCCGGGAACCGGGCGTCGGGGCCGAGCTGGCTAACATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTCCAGCAACAACCTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCCGGACATTTCGAGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGCGACCAGCTCGGCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACTACTCCACCATGACGCTGCACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCACCGTCGATCAGGATGACGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4560#0 GCAGAATCGCCACGAGGTNAGCACGAGGGAAAAGTGTCAACTGTAACTCGCTTCTTCTAA 60 consensus_4560#1 ------------------------------------CCGGTTAAACCACGCTACTATTAA 24 * * * * **** ** *** consensus_4560#0 TACAACA-ATGTCGCTAACGAATAGTGAAGATGCGCTGCTAGTGATC----GAACTCGAG 115 consensus_4560#1 GGTGATGGACGCAGAGAAACAAAAGGCTGAAAGTGGTGCTGAACATCAGAAGAAGGCGAA 84 * * * * ** ** ** * * * **** *** *** *** consensus_4560#0 AAT-CTCAACACGGCAACGGACGATATTAATAAGCTCGAG-ATTGAACTAGAGGAAGCCA 173 consensus_4560#1 GGTGTTCGAGGAGGCAGAAAAGAAAGTACAACAACTGGAGGAACGCTACCGAAGGAGCAT 144 * ** * **** * * * * * ** *** * * ** * *** consensus_4560#0 ACTCCACCTTTCGGATACTGATGAACGAATCGACCCGCCGGTTAAAGCTGTCCTCGAAAA 233 consensus_4560#1 ACAGAAG-TCGCGGCCCTACTTCGACGA---GAAGCAGCTGTGCCAGGAGCAGCTGGAAG 200 ** * * *** * **** ** * * ** ** * * ** consensus_4560#0 AGCTCGGCAGCTGCATCGAGAAGGCCCGCCCGTACTACGAAGCGCTCGAGAAGGCGAAGG 293 consensus_4560#1 CGCAGAAGGGCCGCATCCAGCAGCTCGAGCAGCAGATCCAGGCGGCCAAGAGCGCCTACA 260 ** ** ***** ** ** * * * * * * *** * *** ** * consensus_4560#0 TGGCCCAGCTGGAGTGCCAGGCGGCGACGCTCAAGTACCAGCGGGCGAACGAGATACACG 353 consensus_4560#1 GTACCGCGCTT---CGCAATCTGGAAAAGATTA---GCGAGGAGATACACGAGCAG--CG 312 ** *** ** * ** * * * * * ** * ***** ** consensus_4560#0 CGGCGGCCAAGGAAACGGTCGCGCTGGCCGAGCAGCGGTTCATGAGCAAGCTCGCACGAA 413 consensus_4560#1 AGGCGATCTTAGCCA-GGCCGCACCGTCCGGCCCCCGGGAACCGGGCGTCGGGGCCGAGC 371 **** * * * ** *** * * *** * *** * ** ** consensus_4560#0 TGGCAGTTCGAGCAATGCCTGGCAGGAAATGTTAAACCACGCTACTATTAAGGTGATGGA 473 consensus_4560#1 TGGCTAA-CATTCTGCCCACGGCAAGCAGCACCACCGCCAGTAGCAACTCCAGCAACAAC 430 **** * * * **** * * * * * * * * * * consensus_4560#0 CGCAGAGAAACAAAAGGCTGAAAGTGGTGCT-GAACATCAGAAGAAGGCGAAGGTGTTCG 532 consensus_4560#1 CTGCACAAGGTACCGGGCAAGGATCGGTTCCCGTACAGTAGCACCATGCCGGACATTTCG 490 * * * *** * *** * * *** ** * * ** **** consensus_4560#0 AGGAGGCAGAAAAGAAAGTAAGTATAACGAGTCACGCGTGCTGCTAGAATGAAGCGCAAG 592 consensus_4560#1 AGCGAGCTGGACAAGTGCGAAATCCGCTCAGTGGGCAGTGCGTCGGTGGCGACCAGCTCG 550 ** ** * * * ** * *** **** * ** ** * consensus_4560#0 GA-GTCAATCGAGAGGTTTAATGTGTGTAGAACCACTTTAGTGACGCGGGTCAAGCACTA 651 consensus_4560#1 GCCGTCAGCGAAAAGGATCCATCCGAGGAGGACGACT------ACTCCACCATGACGCTG 604 * **** * *** * ** * * ** ** *** ** * * ** consensus_4560#0 AATTTAATCCAAACAGAAACGTCACGTGCTTTTGCCATTTTTTTGGTGTTGTTGCGATTT 711 consensus_4560#1 CACGACGACGAGGACGATCTGCCGGCGGCAGTAGCAGCAGCGGCAGCATCATCCACCGTC 664 * * * ** * * ** * ** * * * * consensus_4560#0 AATCTAAACGTGTTTAGGCCATGTGTGTTTCCGCGTCTGAAAAGACAAAAAAGAAAACAT 771 consensus_4560#1 GATCAGGATGACGAT--------------------------------------------- 679 *** * * * consensus_4560#0 ATGTTGCACCATGCGCACGACGACCTCGTTAATCTTCGGACTTTTCCATCACCGGCTATC 831 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 ATTGCCGGGGTGAAACCAATTCGTCAAACGCGACCATACTGTAACGCTGTCCGATTTGCT 891 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 TCACACGTTGTTGCACGTGAGCTGCTGCAAACGTGCT 928 consensus_4560#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||