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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1550 fasta sequence
[TCTTTCGAAACGTGCTCTTCGCTGCTCAGCTGCGGCACCTGCTCCTGTACCTCATCTTCATTCGCCGAATGCCATTCCGCATCGGGTTGTCGAGCAGCTACTGTTTGCTCGATCAACATCGACAATAGCCGTGTCTGCTCGTCCAATTTTTCCTCCATTCTGGATAGCCGCGGGTGAGACAATCTGCTCGCCCGATAGCTCTATTGCAACCTTGCACCTCGGTACACACTTAGCACGCGGTATGGTGAGCGCGACCGCACCCTCGACCCCTCAGCTTCAATCAGCGATACCTAACTAACTAGGCGATTCCAGGGTTCCAGGGCTACATTGTGCAGCATGCGTTGTTGTGTTAGACATTGCGTTTATCGTGTTTAGTACCTATTTAACTTTTCCATACCAATTCCGACCTTCTTCATCTATCGTTTTTTTCGCAACGCTGTTTACCTAAATCCGTGGTGCAGAAGATACCAATCTAAGCTAAATACACGTGTCCTATTGAGTACCACGCCGGGTAGGAAGGTACTTTCCCGACGATACATCACTGGATGCAACTATGAAAATTCCGTGTACAATTTAGGATGATTTGTGGGATTGCTTCATGAGACATAGATTCTATTTTAAGTATGATTGCGTGCTGCTAGATAATTATGATGCTTGGTAAACGTTTCGGCAACGTGAACGTCTTTTACCCGCTCCAAACAGGCCGCATCGTCCGACAGATCAAGAGCGGAGGGATAGTGCACCTCTAGGAACAGTAAATCATTTCCGGTGGTTTCCGCGATACGATTAAATCCTTGAAAATCTAATCCATCGACTGCGGAAGATTGCATATCTGCGCCATCGAACACTTCCTGTATTAGTACGATGTAGGACGCATGAAAAAACTGTGGTCCTTTTACGTAAATCACAAAATCTCCTCCAAACTTGATTCCACTTTTAATGATCCAATTTTTCGACTTCAGATACAAATAAGCACAGTAGCACGCCAGGAAGTTGCGCTTCACTGTCCGGAACTTTGCAAATGCCTGCGCAACGCTGATCGTGTTCCCGCGCGTGTCTTTAAGGCACAAAATGTTCAACACATGCATCAGGAAGAAGGCTTCCTCTAAAAATAAGCAGAGCGGTTCCTCGATCATCCCAGCACTCGGGTCTTGCGTCGATGCGGGCAGATGCCGTTTCCTTTTGCGTGTCGCGTCTCGCGCGTTTGTCATGCAAACCGGGAATGCGCGAGACAACATGCCCTGCCCGAAACCTCCATTTAAGCATAGCAGCCGTATATCGACGGGATTTACGACATCAATTGTGTATCCCGTAAAGATGGCTTCTATCGGCAAGGGCTCGCCATCAACCGGCACCGGCAGTGGCAGTGTTTGCGAGAGTTCCGGTGGAGTTTTCTTCTTCGGTTTAAGGCTAAAAGCAAATAAATTACACTTTGCCGCCATCACTAGGGGAAGAATAATTTGTAGATTTGTAGATTATCTATTAAACATTTTTAGTTTTTGGTGCAGTAAAAGGCACGTTCTGTGAAGCAGCTAATTGTGTTTTTTTCC]
[+] EMBL CNS08PEK [TCTTTCGAAACGTGCTCTTCGCTGCTCAGCTGCGGCACCTGCTCCTGTACCTCATCTTCATTCGCCGAATGCCATTCCGCATCGGGTTGTCGAGCAGCTACTGTTTGCTCGATCAACATCGACAATAGCCGTGTCTGCTCGTCCAATTTTTCCTCCATTCTGGATAGCCGCGGGTGAGACAATCTGCTCGCCCGATAGCTCTATTGCAACCTTGCACCTCGGTACACACTTAGCACGCGGTATGGTGAGCGCGACCGCACCCTCGACCCCTCAGCTTCAATCAGCGATACCTAACTAACTAGGCGATTCCAGGGTTCCAGGGCTACATTGTGCAGCATGCGTTGTTGTGTTAGACATTGCGTTTATCGTGTTTAGTACCTATTTAACTTTTCCATACCAATTCCGACCTTCTTCATCTATCGTTTTTTTCGCAACGCTGTTTACCTAAATCCGTGGTGCAGAAGATACCAATCTAAGCTAAATACACGTGTCCTATTGAGTACCACGCCGGGTAGGAAGGTACTTTCCCGACGATACATCACTGGATGCAACTATGAAAATTCCGTGTACAATTTAGGATGATTTGTGGGATTGCTTCATGAGACATAGATTCTATTTTAAGTATGATTGCGTGCTGCTAGATAATTATGATGCTTGGTAAACGTTTCGGCAACGTGAACGTCTTTTACCCGCTCCAAACAGGCCGCATCGTCCGACAGATCAAGAGCGGAGGGATAGTGCACCTCTAGGAACAGTAAATCATTTCCGGTGGTTTCCGCGATACGATTAAATCCTTGAAAATCTAATCCATCGACTGCGGAAGATTGCATATCTGCGCCATCGAACACTTCCTGTATTAGTACGATGTAGGACGCATGAAAAAACTGTGGTCCTTTTACGTAAATCACAAAATCTCCT ]
[-] EMBL CNS08PEJ [ tattCAGGCCGCATCGTCCGACAGATCAAGAGCGGAGGGATAGTGCACCTCTAGGAACAGTAAATCCTTTCCGGTGGTTTCCGCGATACGATTTAATCCTTGAAAATCTAATCCATCGACTGCGGAAGATTGCATATCTGCGCCATCGAACACTTCCTGTATTAGTACGATGTAGGACGCATGATAAAACTGTGGTCCTTTTACGTAAATCACAAAATCTCCTCCAAACTTGATTCCACTTTTAATGATCCAATTTTTCGACTTCAGATACAAATAAGCACAGTAGCACGCCAGGAAGTTGCGCTTCACTGTCCGGAACTTTGCAAATGCCTGCGCAACGCTGATCGTGTTCCCGCGCGTGTCTTTAAGGCACAAAATGTTCAACACATGCATCAGGAAGAAGGCTTCCTCTAAAAATAAGCAGAGCGGTTCCTCGATCATCCCAGCACTCGGGTCTTGCGTCGATGCGGGCAGATGCCGTTTCCTTTTGCGTGTCGCGTCTCGCGCGTTTGTCATGCAAACCGGGAATGCGCGAGACAACATGCCCTGCCCGAAACCTCCATTTAAGCATAGCAGCCGTATATCGACGGGATTTACGACATCAATTGTGTATCCCGTAAAGATGGCTTCTATCGGCAAGGGCTCGCCATCAACCGGCACCGGCAGTGGCAGTGTTTGCGAGAGTTCCGGTGGAGTTTTCTTCTTCGGTTTAAGGCTAAAAGCAAATAAATTACACTTTGCCGCCATCACTAGGGGAAGAATAATTTGTAGATTTGTAGATTATCTATTAAACATTTTTAGTTTTTGGTGCAGTAAAAGGCACGTTCTGTGAAGCAGCTAATTGTGTTTTTTTCC]
consensusID : consensus_4561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CTTNGCTGCCTCCGTGCAGATTCGCGTCCTGTTTTGGGCCCGAGCTGTTTGACATGGTTCCTTTAGNCCTGGCCGATNTAATCATAGCCCGCTCCTTCTCCCACCCTGCTCTGCAGTCTGTAAACCCCATATACATAGGGCTTTCACCAGCAGAGTCGATGATGCCAGTCTGGTTCCCGAATTTGTACCTTGGGAGCTGTAGTCGGTGATGGCACCTCTCCCAGTCCAGCTAAATTTCGCAAAGGACGTCGTACGTGACGAGAGTCTCCAACACTCGTCTTACATTCCGGGCTCTCGTTTGCGATGCGACCACCTCCTGTTGTAATTCTTCCGCCATTTGCTGTACAAACTCTTCGTTTCCGGCACAGCTAGAGTTCAATACAAAAAAGTCATTCACGGTTCTTATTGGCAGAACCGGGATTTCTGGCGCTGCCTCATGCTCCTCATTACGTTCCTGCTCGTCATCCTGATCCTCTTCCGTTTCATTTTTCGCGTTGTGCTCTTCGCTGCTCGGCTGCGGCACCTGCTCCTGTACCTCATCTTCATTCGCCGAATGCCATTCCGCATCGGGTTGTCGAGCAGCTACTATTTGCTCGATCAACATCGACAATAGCCGTGTCTGCTCGTCCAATTTTTGTTCCATTCTAGATAGCCGCGGGTGAAGCAATTTGNCCTCGTGGCCGATTCTGG]
[-] EMBL BX469457 [CTTNGCTGCCTCCGTGCAGATTCGCGTCCTGTTTTGGGCCCGAGCTGTTTGACATGGTTCCTTTAGNCCTGGCCGATNTAATCATAGCCCGCTCCTTCTCCCACCCTGCTCTGCAGTCTGTAAACCCCATATACATAGGGCTTTCACCAGCAGAGTCGATGATGCCAGTCTGGTTCCCGAATTTGTACCTTGGGAGCTGTAGTCGGTGATGGCACCTCTCCCAGTCCAGCTAAATTTCGCAAAGGACGTCGTACGTGACGAGAGTCTCCAACACTCGTCTTACATTCCGGGCTCTCGTTTGCGATGCGACCACCTCCTGTTGTAATTCTTCCGCCATTTGCTGTACAAACTCTTCGTTTCCGGCACAGCTAGAGTTCAATACAAAAAAGTCATTCACGGTTCTTATTGGCAGAACCGGGATTTCTGGCGCTGCCTCATGCTCCTCATTACGTTCCTGCTCGTCATCCTGATCCTCTTCCGTTTCATTTTTCGCGTTGTGCTCTTCGCTGCTCGGCTGCGGCACCTGCTCCTGTACCTCATCTTCATTCGCCGAATGCCATTCCGCATCGGGTTGTCGAGCAGCTACTATTTGCTCGATCAACATCGACAATAGCCGTGTCTGCTCGTCCAATTTTTGTTCCATTCTAGATAGCCGCGGGTGAAGCAATTTGNCCTCGTGGCCGATTCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4561#0 TCTTTCGAAACGTGCTCTTCGCTGCTCAGCTGCGGCACCTGCTCCTGTACCTCATCTTCA 60
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 TTCGCCGAATGCCATTCCGCATCGGGTTGTCGAGCAGCTACTGTTTGCTCGATCAACATC 120
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 GACAATAGCCGTGTCTGCTCGTCCAATTTTTCCTCCATTCTGGATAGCCGCGGGTGAGAC 180
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 AATCTGCTCGCCCGATAGCTCTATTGCAACCTTGCACCTCGGTACACACTTAGCACGCGG 240
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 TATGGTGAGCGCGACCGCACCCTCGACCCCTCAGCTTCAATCAGCGATACCTAACTAACT 300
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 AGGCGATTCCAGGGTTCCAGGGCTACATTGTGCAGCATGCGTTGTTGTGTTAGACATTGC 360
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 GTTTATCGTGTTTAGTACCTATTTAACTTTTCCATACCAATTCCGACCTTCTTCATCTAT 420
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 CGTTTTTTTCGCAACGCTGTTTACCTAAATCCGTGGTGCAGAAGATACCAATCTAAGCTA 480
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 AATACACGTGTCCTATTGAGTACCACGCCGGGTAGGAAGGTACTTTCCCGACGATACATC 540
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 ACTGGATGCAACTATGAAAATTCCGTGTACAATTTAGGATGATTTGTGGGATTGCTTCAT 600
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 GAGACATAGATTCTATTTTAAGTATGATTGCGTGCTGCTAGATAATTATGATGCTTGGTA 660
consensus_4561#1 ------------------------------------------------------------
consensus_4561#0 AACGTTTCGGCAACGTGAACGTCTTTTACCCGCTCCAAACAGGCCGCATCGTCCGACAGA 720
consensus_4561#1 ---------------------------------------------------CTTNGCTGC 9
* *
consensus_4561#0 TCAAGAGCGGAGGGATAGTGCACCTCTAGGAACAGTAAATCATTTCCGGTGGTTTCCGCG 780
consensus_4561#1 CTCCGTGCAGAT---TCGCGTCCTGTTTTGGGCC-CGAGCTGTTTGACATGGTTCCTTTA 65
* ** ** * * * * * * * * *** ***** *
consensus_4561#0 ATAC-GATTAAATCCTTGAAAATCTAATCCATCGACTGCGGAAGATTGCATATCTGCGCC 839
consensus_4561#1 GNCCTGGCCGATNTAATCATAGCCCGCTCCTTCTCCCACCCTGCTCTGCA-GTCTGTAA- 123
* * * * * * * *** ** * * **** ****
consensus_4561#0 ATCGAACACTTCCTGTATTAGTACGATGTAGGACGCATGAAAAAACTGTGGTCCTTTTAC 899
consensus_4561#1 ACCCCATATACATAGGGCTTTCACCA-GCAGAGTCGATGATGCCAGTCTGGTTCCCGAAT 182
* * * * * * ** * * ** **** * * **** * *
consensus_4561#0 GTAAATCACAAAATCTCCTCCAAACTTGATTCCACTTTTAATGATCCAATTTTTCGACTT 959
consensus_4561#1 TTGTACCTTGGGAGCTGTAGTCGG--TGATGGCACCTCTCCCAGTCCAGC---TAAATTT 237
* * * * ** **** *** * * **** * * **
consensus_4561#0 CAGATACAAATAAGCACAGTAGCACGCCAGGAAGTTGCGCTTCACT-GTCCGGAACTTTG 1018
consensus_4561#1 CGCA-------AAGGAC-GTCGTACGTGACGAGAGTCTCCAACACTCGTCTTACATTCCG 289
* * *** ** ** * *** * ** * * **** *** * * *
consensus_4561#0 CAAATGCCTGCGCAACGCTGATCGTGTTCCCGCGCGTGTCTTTAAGGCACAAAATGTTCA 1078
consensus_4561#1 GGCTCTCGTTTGCGATGC-GACCAC-CTCCTGTTGTAATTCTTCCGCCATTTGCTGTACA 347
* * ** * ** ** * *** * * ** * ** *** **
consensus_4561#0 ACACATGCATCAGGAAGAAGGCTTCCTCTAAAAATAAGCAGAGCGGTTCCTCGATCATCC 1138
consensus_4561#1 AACTCTTCGTTTCCGGCACAGCTAGAGTTCAATACAAA-AAAGTCATTCACGGTTCTTAT 406
* * * * * *** * ** * ** * ** *** * ** *
consensus_4561#0 CAGCAC--TCGGGTCTTGCGTCGATGCGGGCAGATGCCGTTTCCTTTTGCGTGTCGCGTC 1196
consensus_4561#1 TGGCAGAACCGGGATTTCTGGCGCTGCCTCATGCTCCTCATTACGTTCCTGCTCGTCATC 466
*** **** ** * ** *** * * * ** * ** * * **
consensus_4561#0 TCGCGCGTTTGTCATGCAAACCGGGAATGCGCGAGACAACATGCCCTGCCCGAAACCTCC 1256
consensus_4561#1 CTGATCCTCTTCCGTTTCATTT-----TTCGCGTTGTGCTCTTCGCTGCTCGGCTGCGGC 521
* * * * * * * * **** * * **** ** * *
consensus_4561#0 ATTTAAGCATAGCAGCCGTATATCGACGGGATTTACGACATCAATTGTGTATCCCGTAAA 1316
consensus_4561#1 ACCT-------GCTCCTGTACCTCATCTTCATT-----CGCCGAATGC-CATTCCGCATC 568
* * ** * *** ** * *** * * * ** ** *** *
consensus_4561#0 GATGGCTTCTATCGGCAAGGGCTCGCCATCAACCGGCACCGGCAGTGGCAGTGTTTGCGA 1376
consensus_4561#1 GG-GTTGTCGAGCAGCTACTATTTGC--TCGATCAACATCGACAATAGCCGTGTCTGC-- 623
* * ** * * ** * * ** ** * * ** ** ** * ** **** ***
consensus_4561#0 GAGTTCCGGTGGAGTTTTCTTCTTCGGTTTAAGGCTAAAAGCAAATAAATTACACTTTGC 1436
consensus_4561#1 -----TCGTCCAATTTTTGTTCCATTCTAGATAGCCGCGGGTGAAGCAATTTGNCCTCGT 678
** * **** *** * * ** * ** **** * * *
consensus_4561#0 CGCCATCACTAGGGGAAGAATAATTTGTAGATTTGTAGATTATCTATTAAACATTTTTAG 1496
consensus_4561#1 GGCCGATTCTGG------------------------------------------------ 690
*** ** *
consensus_4561#0 TTTTTGGTGCAGTAAAAGGCACGTTCTGTGAAGCAGCTAATTGTGTTTTTTTCC 1550
consensus_4561#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||