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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1064 fasta sequence
[CCGGTAAAATTGACTAGTTTTTTCCTCGTGGAATTATATTCCTGTATATCAGTAAAATCCATGAAAATAATGTTAGAAACGTAGCTCATTGATTTTTCCCCCCCATTTCTCCCTGGTCTGACGCTGTTGTAGTGAACGCGTATCTTCAATAACAAATAATAATAGTCATCTTCCATCGTAAATTTGGCCGTGCTCCACCACATCATACGGTAATAGTTAAGTACCCCATCCATGAATAGTTAAGCATGGTCAAAACAAGCATTGCGTTCTATTTATGCAATTTTCACTCGTACACTCCCAGGTTTACTTCCTTATTTACAGTAAGCGTCCACAAGGTGCAGTACCATCGTACCTCAGCTGGCAGCCATAAGCATTACTCGGCAATGAATTAGTAGCGCATTACTCGACGATTTTAACCATGAGCCGTACGTACCAGCTAAACAAAGAGGAAGAGATAAAGGGAGAGTGAAAGAGGAGATAGCGTATATTAGTAAATAGTAATAGTTTCAGTTGGTCGTGGATCCCCTTTCGTTTGCATCTTTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCTATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGGAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGTTCCGTTCCCACCCTTTGAGTGGTTGGTAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGATCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTATTTTTTTTGTTTGATTGTTTTTAGATGTGGTAATATGGGAAGAAGGTTTAATGTGATTTGTTACACGGTGAAGATGGTGTATGGTGTGGTGTTGAAGTTGTTTAATTCTTCTTTAAATAATGCTTTTAATAAATAGTTTCAAGCTTCATAA]
[+] EMBL BM649330 [CCGGTAAAATTGACTAGTTTTTTCCTCGTGGAATTATATTCCTGTATATCAGTAAAATCCATGAAAATAATGTTAGAAACGTAGCTCATTGATTTTTCCCCCCCATTTCTCCCTGGTCTGACGCTGTTGTAGTGAACGCGTATCTTCAATAACAAATAATAATAGTCATCTTCCATCGTAAATTTGGCCGTGCTCCACCACATCATACGGTAATAGTTAAGTACCCCATCCATGAATAGTTAAGCATGGTCAAAACAAGCATTGCGTTCTATTTATGCAATTTTCACTCGTACACTCCCAGGTTTACTTCCTTATTTACAGTAAGCGTCCACAAGGTGCAGTACCATCGTACCTCAGCTGGCAGCCATAAGCATTACTCGGCAATGAATTAGTAGCGCATTACTCGACGATTTTAACCATGAGCCGTACGTACCAGCTAAACAAAGAGGAAGAGATAAAGGGAGAGTGAAAGAGGAGATAGCGTATATTAGTAAATAGTAATAGTTTCAGTTGGTCGTGGATCCCCTTTCGTTTGCATCTTTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCTATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGGAGAAAGTCGTGC ]
[+] EMBL BX627736 [ TTTGCATCTTTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCTATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATT GAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGTTCCGTTCCCACCCTTTGAGTGGTTGGTAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGATCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTATTTTTTTTGTTTGATTGTTTTTAGATGTGGTAATATGGGAAGAAGGTTTAATGTGATTTGTTACACGGTGAAGATGGTGTATGGTGTGGTGTTGAAGTTGTTTAATTCTTCTTTAAATAATGCTTTTAATAAATAGTTTCAAGCTTCATAA]
consensusID : consensus_4563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[CCGCGGACGCGTGGGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGATCCGTTCCCACCCTTTGAGTGGTTGGAAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGACCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTAT]
[+] EMBL BM644710 [CCGCGGACGCGTGGGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGAGAAAGTCGTGCCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGATCCGTTCCCACCCTTTGAGTGGTTGGAAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCGACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGACCATGTGTCACATCAGTTTTGTTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTTCACAGTTCCTCTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4563#0 CCGGTAAAATTGACTAGTTTTTTCCTCGTGGAATTATATTCCTGTATATCAGTAAAATCC 60
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 ATGAAAATAATGTTAGAAACGTAGCTCATTGATTTTTCCCCCCCATTTCTCCCTGGTCTG 120
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 ACGCTGTTGTAGTGAACGCGTATCTTCAATAACAAATAATAATAGTCATCTTCCATCGTA 180
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 AATTTGGCCGTGCTCCACCACATCATACGGTAATAGTTAAGTACCCCATCCATGAATAGT 240
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 TAAGCATGGTCAAAACAAGCATTGCGTTCTATTTATGCAATTTTCACTCGTACACTCCCA 300
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 GGTTTACTTCCTTATTTACAGTAAGCGTCCACAAGGTGCAGTACCATCGTACCTCAGCTG 360
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 GCAGCCATAAGCATTACTCGGCAATGAATTAGTAGCGCATTACTCGACGATTTTAACCAT 420
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 GAGCCGTACGTACCAGCTAAACAAAGAGGAAGAGATAAAGGGAGAGTGAAAGAGGAGATA 480
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 GCGTATATTAGTAAATAGTAATAGTTTCAGTTGGTCGTGGATCCCCTTTCGTTTGCATCT 540
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 TTTGTAAGCTTTACCTCTAACTTCATCACTTGTACTCCTTTTATATGTTACTCTAATCCT 600
consensus_4563#1 -------------------------------------------------CCGCGGACGCG 11
* * * *
consensus_4563#0 ATTGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTGGAGAAAGTCGTG 660
consensus_4563#1 TGGGCCAAAAACTGCAGCCTAATCGTGATCGAACAGGTGATTGTATTG-AGAAAGTCGTG 70
********************************************* ***********
consensus_4563#0 CCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGTTC 720
consensus_4563#1 CCGCCAGAACACTACTCTACTCTCAGCAATCACAAAGTTGATGTTGGACGGACATCGATC 130
********************************************************* **
consensus_4563#0 CGTTCCCACCCTTTGAGTGGTTGGTAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCG 780
consensus_4563#1 CGTTCCCACCCTTTGAGTGGTTGGAAGCGTCGCTTCAACCAGCTTCATTAAGGGTCGGCG 190
************************ ***********************************
consensus_4563#0 ACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGATCATGTGTCACATCAGTTTTG 840
consensus_4563#1 ACATTGGTCAGAGCTTGAGAGCTGTTTTAAGCAAGTTGACCATGTGTCACATCAGTTTTG 250
*************************************** ********************
consensus_4563#0 TTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTT 900
consensus_4563#1 TTGAGTGGAAAGTCCCTTGCCTGAGAGCGTCGAAGGCAGGCGAAATTGTTAGCACAATTT 310
************************************************************
consensus_4563#0 CACAGTTCCTCTATTTTTTTTGTTTGATTGTTTTTAGATGTGGTAATATGGGAAGAAGGT 960
consensus_4563#1 CACAGTTCCTCTAT---------------------------------------------- 324
**************
consensus_4563#0 TTAATGTGATTTGTTACACGGTGAAGATGGTGTATGGTGTGGTGTTGAAGTTGTTTAATT 1020
consensus_4563#1 ------------------------------------------------------------
consensus_4563#0 CTTCTTTAAATAATGCTTTTAATAAATAGTTTCAAGCTTCATAA 1064
consensus_4563#1 --------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||