These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence [AACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCAGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAACGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATGCCATCTGTATCAGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAACTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGACTGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCACCCTCAAGTATCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGCCCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACTGTCGGGCTGCAAGCATTGCCGCCTGATCAGCTCGAGCGAGACTGTGCGGGCATCGAGATCTGTCGCAAAGGATGGCACGATCCCAATGTGGATGT] [+] EMBL BX624940 [AACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCAGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAACGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATGCCATCTGTATCAGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAACTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGACTGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCACCCTCAAGTATCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGCCCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACTGTCGGGCTGCAAGCATTGCCGCCTGATCAGCTCGAGCGAGACTGTGCGGGCATCGAGATCTGTCGCAAAGGATGGCACGATCCCAATGTGGATGT] [+] EMBL BX621634 [ ACAATACGGTCGTTGGGTTCGTCGTTCTCACCATCCGAATGTCTTGCCTTGGACCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAACAGCAGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAACGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATGCCATCTGTATCCGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAACTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGACTGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCACCCTCAAGTACCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGCCCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACCGTCGGGCTGCAAGCGCTCCCGCCCGATCAGCTCGAGCGAGACTGTGCCGGCATCGAGATCTGTCGCAAAGGATGGCACGATCCGAATGTGGAT ] consensusID : consensus_4570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [NGCCAAACGAAACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCCAGCTGGTATGTCCCGANNGGGANGCCCTGGCCCAGCATNNGGTNNNGAANCGNGCCCATTCGAAGGCCCCGGGAAAGTTGGCAAACCCCGGTTAACCGGAATGGAAAGTTT] [+] EMBL BX619097 [NGCCAAACGAAACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGAATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAATGTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCAGCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGAGGACCAGGACGAGCAGCCAGCTGGTATGTCCCGANNGGGANGCCCTGGCCCAGCATNNGGTNNNGAANCGNGCCCATTCGAAGGCCCCGGGAAAGTTGGCAAACCCCGGTTAACCGGAATGGAAAGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4570#0 ----------AACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGA 50 consensus_4570#1 NGCCAAACGAAACAAACCCGTTTCGAACACACTGAAAGCAATGTATCCGCTAGAAGCTGA 60 ************************************************** consensus_4570#0 ATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAAT 110 consensus_4570#1 ATCGAACGGTAGCAACAACAACAATACGGTCGTTGGGTTTGTCGTTCTCACCATCCGAAT 120 ************************************************************ consensus_4570#0 GTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCA 170 consensus_4570#1 GTCTTGCCTTGGGCCGAACATCAATCAGAAGGTACTGTTCGGAGGGCGTGATCTGCAGCA 180 ************************************************************ consensus_4570#0 GCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGA 230 consensus_4570#1 GCAACCGGTCACTTGCTACAAGGTGCAAGACGAACCGGTCGTACAGTGTGTGACGCTCGA 240 ************************************************************ consensus_4570#0 GGACCAGGACGAGCAGC-AGCTGGTATGTCCGAAGGGAAGCCTTGCCAGCATTGTCGGAA 289 consensus_4570#1 GGACCAGGACGAGCAGCCAGCTGGTATGTCCCGANNGGGAN---GCC-------CTGGCC 290 ***************** ************* * * *** ** consensus_4570#0 CGGCCATCGAGCCGGAAGTGCAACCGTACGATGAGTATGCGGCAGAACTGAACGGGAATG 349 consensus_4570#1 CAGCATNNGGTNNNGAANCGNGCCCATTCGA--AGGCCCCGGGAAAGTTG---GCAAACC 345 * ** * *** * ** * *** ** *** * * ** * ** consensus_4570#0 CCATCTGTATCAGGGTGGAGAAGGACGCCAACATTGCGGTCAGCCTTGACGGAGAGGAAA 409 consensus_4570#1 CCGGTTA-ACCGGAATGGAAAGTTT----------------------------------- 369 ** * * * * **** * consensus_4570#0 CTGACGGTTGCACCAAAGGGTGTTGGACCTCTCTTACCCTTCCGGATGGAGTGTACGGAC 469 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 TGAAGGAGGAATACGTCCGCCGGGAAGCGAACAACTGCCAGCTGCCCGTCATCCGCGGCA 529 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CCCTCAAGTATCCGGCGTATCATTGGGCGGGCGATTTTATGGTCGCTAAAAAGACAACGC 589 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CCGTTACGGTGGACGACTACCGGAAGCGGCCCGATCCTACGCGTACTGTCGGGCTGCAAG 649 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 CATTGCCGCCTGATCAGCTCGAGCGAGACTGTGCGGGCATCGAGATCTGTCGCAAAGGAT 709 consensus_4570#1 ------------------------------------------------------------ consensus_4570#0 GGCACGATCCCAATGTGGATGT 731 consensus_4570#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||