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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTGTGCAGGCATGTTTGTTACTATGTCTGACACACGAATGCAGGTTAAGTTGTGCAACTATCACTGTCAGAACGTACAATTCAAGTTAAAGTGGAGAAATTGAACATTTGTACAAACAAATCCTTTGCAAATCGCTATTAATCCTGATCGCTCAAGCACACGTACACTGCAAGTAGTCAAAAGTTCGAAACATAACGACAAAAGTATAATGATAACTCATTTCGAATTTGTATTTTTTTAAATTTAAGTGCATTATTTAGGTTTACATAACTTCTGTGTCTCGTGAAATGATGTGCAAGTGTTATTTATAACACTGAAGCGTTACGTTTATAAAGCAAACAATTTCTCGGTAAACTGAAGCGGCGATACACACGTTATCTGTAGCATCTTTTTGAGATAACCTATGCGTTTAACAGCTAAAATGAACCCATTTTGCATGGTAGCAGACGTATTACGAAATCTTCCATTCCCCCCGAAAAACTTCCACTTCTAGCCAGTTCTACATCGAACCAGAACAAGAATTGGCCAGAAAAGCAACAATGCGTAAATTTGATAAGAATACATACGCAAATGAGGAAACATTTGCAATGAAAGTACTCTACACCATCAAAAACTTCTTAGATATGAATATATAAGCATGTACACTACTGAGATTAAGTGGTTTATCTTCATGCAACGTTTAAGCCAATGGCGAGCCAGCCACCAAAGACTCCTAAAGACACAAATTATTAGAAAAAAGCTCCCTACGTTTCGTTTCCTCTGTAA]
[+] EMBL AGA281468 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTGTGCAGGCATGTTTGTTACTATGTCTGACACACGAATGCAGGTTAAGTTGTGCAACTATCACTGTCAGAACGTACAATTCAAGTTAAAGTGGAGAAATTGAACATTTGTACAAACAAATCCTTTGCAAATCGCTATTAATCCTGATCGCTCAAGCACACGTACACTGCAAGTAGTCAAAAGTTCGAAACATAACGACAAAAGTATAATGATAACTCATTTCGAATTTGTATTTTTTTAAATTTAAGTGCATTATTTAGGTTTACATAACTTCTGTGTCTCGTGAAATGATGTGCAAGTGTTATTTATAACACTGAAGCGTTACGTTTATAAAGCAAACAATTTCTCGGTAAACTGAAGCGGCGATACACACGTTATCTGTAGCATCTTTTTGAGATAACCTATGCGTTTAACAGCTAAAATGAACCCATTTTGCATGGTAGCAGACGTATTACGAAATCTTCCATTCCCCCCGAAAAACTTCCACTTCTAGCCAGTTCTACATCGAACCAGAACAAGAATTGGCCAGAAAAGCAACAATGCGTAAATTTGATAAGAATACATACGCAAATGAGGAAACATTTGCAATGAAAGTACTCTACACCATCAAAAACTTCTTAGATATGAATATATAAGCATGTACACTACTGAGATTAAGTGGTTTATCTTCATGCAACGTTTAAGCCAATGGCGAGCCAGCCACCAAAGACTCCTAAAGACACAAATTATTAGAAAAAAGCTCCCTACGTTTCGTTTCCTCTGTAA]
consensusID : consensus_458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[TTCTAAAACGCTTTATTGATTTTACTGCAGTGCAATTTGTGGGTTCGTATATGTTGAGCACATTGTATAATTTATTACTCAGTTCACCCAATCGTATTCCAAAGGGACTGATGATATCGACTGATAAATGCATGTAAAAATACTAAGTATAAATCATCCTGTATGAAGAGTAGTAAACAAATCCGATAAAACAAAACATTCGAAAAATATGTAAAAAAAAGTAACACAGCAATAGGTGGAAAGTTCTCACAACGCCATCATCGCACAATAGTAGTATACAAAAAACAAAAAAAAATACCAAATACCTTTTTTCAGATTTGATATCAATGTTAAGCACCGATAAAGCCGTCCTTCCATTTTTGAGTTCTATTTGTTGTTTGTTGTGCAGGCATGTNTGTTACTATGTCTGACACACGAATGCAGGTTAAGTTGTGCAACTATCACTGTCAGAACGTACAATTCAAGTTAAAGTGGAGAAATNGANCATNTGTACAAANTAAATCCTNTGCANANTCGCTACAAAAAAAAAAAAAAA]
[+] EMBL CF541618 [TTCTAAAACGCTTTATTGATTTTACTGCAGTGCAATTTGTGGGTTCGTATATGTTGAGCACATTGTATAATTTATTACTCAGTTCACCCAATCGTATTCCAAAGGGACTGATGATATCGACTGATAAATGCATGTAAAAATACTAAGTATAAATCATCCTGTATGAAGAGTAGTAAACAAATCCGATAAAACAAAACATTCGAAAAATATGTAAAAAAAAGTAACACAGCAATAGGTGGAAAGTTCTCACAACGCCATCATCGCACAATAGTAGTATACAAAAAACAAAAAAAAATACCAAATACCTTTTTTCAGATTTGATATCAATGTTAAGCACCGATAAAGCCGTCCTTCCATTTTTGAGTTCTATTTGTTGTTTGTTGTGCAGGCATGTNTGTTACTATGTCTGACACACGAATGCAGGTTAAGTTGTGCAACTATCACTGTCAGAACGTACAATTCAAGTTAAAGTGGAGAAATNGANCATNTGTACAAANTAAATCCTNTGCANANTCGCTACAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_458#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTGTTGTGCAGGCATGTTTGTTACTATG 60
consensus_458#1 -------------TTCTAAAACGCTTTATTGATTTTACTGCAGTGCAATTTGTGGGTTCG 47
** * *** *** ** * ***** ***** * *
consensus_458#0 TCTGACACACGAATGCAGGTTAAGTTGTGCAACT-ATCACTGTCAGAACGTACAATTCAA 119
consensus_458#1 TAT---------ATGTTGAGCACATTGTATAATTTATTACT--CAGTTCACCCAATCGTA 96
* * *** * * **** ** * ** *** *** * **** *
consensus_458#0 GTTAAAGTGGAGAAATTGAACATTTGTACAAACAAATCCTTTGCAAATCGCTATTAATCC 179
consensus_458#1 TTCCAA----AGGGACTGATGATATCGACTGATAAATGCATGTAAAAATACTA--AGTAT 150
* ** ** * *** ** * ** * **** * * *** *** * *
consensus_458#0 TGATCGCTCAAGCACACGTACACTGCAAGTAGTCAAAAGTTCGAAACATAACGACAAAAG 239
consensus_458#1 AAATCATCCTGTATGAAGAGTAGTAAACAAATCCGATAAAACAAAACATT-CGAAAAATA 209
*** * * * * * * * * * * * ****** *** ***
consensus_458#0 TATAATGATAACTCATTTCGAATTTGTATTTTTTTAAATTTAAGTGCATTATTTAGGTTT 299
consensus_458#1 TGTAAAAAAAAGTAACACAGCAAT-----------------AGGTGGA------AAGTTC 246
* *** * ** * * * * * * *** * * ***
consensus_458#0 ACATAACTTCTGTGTCTCGTGA-AATGATGTGCAAGTGTTATTTATAA-CACTGAAGCGT 357
consensus_458#1 TCACAACGCCATCATCGCACAATAGTAGTATACAAAAAACAAAAAAAAATACCAAA---- 302
** *** * ** * * * * * * *** * * ** ** **
consensus_458#0 TACGTTTATAAAGCAAACAATTTCTCGGTAAACTGAAGCGGCGATACACACGTTATCTGT 417
consensus_458#1 TACCTTTTTTCAG------ATTTGATATCAATGTTAAGCACCGATAAAGCCGTCCTTC-- 354
*** *** * ** **** ** * **** ***** * *** *
consensus_458#0 AGCATCTTTTTGAGATAACCTATGCGTTTAACA-GCTAAAATGAAC-CCATTTTGCATGG 475
consensus_458#1 ----CATTTTTGAGTTCTATTTGTTGTTTGTTGTGCAGGCATGTNTGTTACTATGTCTGA 410
******** * * **** ** *** * * ** **
consensus_458#0 TA-GCAGACGTATTACGAAATCTTCCATTCCCCCCGA-AAAACTTCCACTTCTAGCCAGT 533
consensus_458#1 CACACGAATGCAGGTTAAGTTGTGCAACTATCACTGTCAGAACGTACAATTCAAGTTAAA 470
* * * * * * * * * * * * * * * *** * ** *** ** *
consensus_458#0 TCTACATCGAACCAGAACAAGAATTGGCCAGAAAAGCAACAATGCGTAAATTTGATAAGA 593
consensus_458#1 ---GTGGAGAAATNGANCATNTGT-----ACAAANTAAATCCTNTGCANANTCGCTACAA 522
*** ** ** * * *** ** * * * * * * ** *
consensus_458#0 ATACATACGCAAATGAGGAAACATTTGCAATGAAAGTACTCTACACCATCAAAAACTTCT 653
consensus_458#1 AAAAAAAAAAAAA----------------------------------------------- 535
* * * * ***
consensus_458#0 TAGATATGAATATATAAGCATGTACACTACTGAGATTAAGTGGTTTATCTTCATGCAACG 713
consensus_458#1 ------------------------------------------------------------
consensus_458#0 TTTAAGCCAATGGCGAGCCAGCCACCAAAGACTCCTAAAGACACAAATTATTAGAAAAAA 773
consensus_458#1 ------------------------------------------------------------
consensus_458#0 GCTCCCTACGTTTCGTTTCCTCTGTAA 800
consensus_458#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||