These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 940 fasta sequence [ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTACTCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTACGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCATCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGGGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAGGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATTGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACGCAACTAT---ACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGACCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGAAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAGTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATATATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA] [+] EMBL BX615603 [ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTACTCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTACGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCATCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGGGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAGGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATTGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACGCAACTAT ACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGACCGATTCCCCGGTATACAAA ] [+] EMBL BX608888 [ GAGCAGCTGTTTCTTGCTAACGATATTGTGGTTTGACGTCTAATTCCTCCGACCCGGCAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAACTTTTAAACGCAAATATACCACAAACAAAACACATACATATATAAAATCAGAAACCAGCGACCAGGACCCGGACCGGTTCCCCGGTACACAGAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGAAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAGTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATATATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA] consensusID : consensus_4581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence [CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGT] [+] EMBL BX610495 [CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4581#0 ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTAC 60 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 TCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTA 120 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 CGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCA 180 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 TCATCATTACACATCCTACATACAATACCCACACACATACACCATTG-AAGAGGCATACG 239 consensus_4581#1 ---------------CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACG 45 ******************************** ************ consensus_4581#0 GAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAG 299 consensus_4581#1 GAAAGCGAACGAACATTATTCAAAG----------------GGGG--------------G 75 ************************* *** * consensus_4581#0 GGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATC 359 consensus_4581#1 GTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATC 135 * ******************************** ************************* consensus_4581#0 AAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAA 419 consensus_4581#1 AAATATCTTAGT------------------------------------------------ 147 ************ consensus_4581#0 GGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAA 479 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 ATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATAT 539 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 TGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTC 599 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 AATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAAC 659 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 GCAACTATACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGG 719 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 ACCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAG 779 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 AAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAA 839 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 GTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATA 899 consensus_4581#1 ------------------------------------------------------------ consensus_4581#0 TATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA 940 consensus_4581#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||