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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1060 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCCCAAGGAGGCAACGATTATTCGAAAATCGGTCATTACAACGCAGTTGTAACGAAAAATCGCCCTTAAGAATCGATGTAGGTAGGAACAGAGTTAAGGTTGGTAGGGATCCATAATGTTAGGCGCTTATTTTATGTGTGCATGAGGGATCGATAATTCCTGTCGCTATGAATATTTTAATCCCTTGGTTTGCAATAGATTTTCGCTCGTTCATTAGATGAGAGCAAAAATTGTACTTAACACGGCGAAGCACGAATGTATTGTGGTGACTGACGAATGGAAATGGTCCACTGAGG---TGGATGCTGCTA-GGACGATACATGTTGGTAGTGTATGTCACTGACAAACAGTCGAACACTGTTAG-GGTGCTTCTTCTTATGTTGTGTTG-TTGTGAAGCCGAGAAAATAAAAGGAATGCCGCATTAGTATTAGATGTGATCTCAGTACATTCCACTGTGGTGAAAACGGTCCGATGTTTCGTCTCGACTGAATTGCACTCGTTCCTCACCGCAAACACGCCAGCTACTGAACAGTATGTAATATGATACAACGAATTTTAAACAATGAATAGAAGCTAGATGAATCACAGCATAGCCCAAACGCGATTGTGTGGTGGCAGCATTGCATTCATTACGGTGATCGTAAATATGCTTCCACAACGCTATGGTAGTAAAGCAATATTCAATTGTCGGTCATTTTAGTTTTGCTCGCTATAAATTGAAAATGTGCTTAGTGGTTCTGTCCTTGAATATGATGTAGCATTGTCTTCAAAAGGTATTACAAAAAAGTGACCTTACACACTTAGTGACGATCGAAGCAGAAAGGATGAGTGGGAGAGCACGTTTGTATGCATTTGAAATGTCTCAGTATAGAATTTGCTTCGGCGTGTTGTGTATGTAAGTAGTAGATGCAATTGAGCAGGAAACAAAAATACGTTAGAAGATTGCTAGCAAACTCGGTTTTGAAACGATAATTCAATCAAAAGCTGACATAGTAACTATGTGTGTGCCTCTGTGTGTGAGCGGAATGTAGCGGGA]
[+] EMBL BM656727 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCCAAGGAGGCAACGATTATTCGAAAATCGGTCATTACAACGCAGTTGTAACGAAAAATCGCCCTTAAGAATCGATGTAGGTAGGAACAGAGTTAAGGTTGGTAGGGATCCATAATGTTAGGCGCTTATTTTATGTGTGCATGAGGGATCGATAATTCCTGTCGCTATGAATATTTTAATCCCTTGGTTTGCAATAGATTTTCGCTCGTTCATTAGATGAGAGCAAAAATTGTACTTAACACGGCGAAGCACGAATGTATTGTGGTGACTGACGAATGGAAATGGTCCACTGAGG TGGATGCTGCTA GGACGATACATGTTGGTAGTGTATGTCACTGACAAACAGTCGAACACTGTTAG GGTGCTTCTTCTTATGTTGTGTTG TTGTGAAGCCGAGAAAATAAAAGGAATGCCGCATTAGTATTAGATGTGATCTCAGTACATTCCACTGTGGTGAAAACGGTCCGATGTTTCGTCTCGACTGAATTGCACTCGTTCCTCACCGCAAACACGCCAGCTACTGAACAGTATGTAATATGATACAACGAATTTTAAACAATGAATAGAAGCTAGATGAATCACAGCATAGCCCAAACGCGATTGTGTGGTGGCAGCATTGCATTCATTACGGTG ]
[+] EMBL AL930370 [ cagaaTCC CCGAGGTTTTGGATGCTGCTAGGGACGATACATGTTGGTAGTGTATGTCACTGACAAACAGTCGAACACTATTAGTGGTGCTTCTTCTTATGTTGTGTTGTTTGTGAAGCCGAGAAAATAAAAGGAATGCCGCATTAGTATTAGATGTGATCTCAGTACATTCCACTGTGGTGAAAATGGTCCGATGTTTCGTCTCGACTGAATTGCACTCGTTCCTCACCGCAAACACGCCAGCTACTGAACAGTATGTAATATGATACAACGAATTTTAAACAATGAATAGAAGCTAGATGATTCACAGCATAGCGCAAACGCGACTGTGTGGTGGCAGCATTGCATTCATTACGGTGATCGTAAATATGCTTCCACAACGCTATGGTAGTAAAGCAATATTCAATTGTCGGTCATTTTAGTTTTGCTCGCTATAAATTGAAAATGTGCTTAGTGGTTCTGTCCTTGAATATGATGTAGCATTGTCTTCAAAAGGTATTACAAAAAAGTGACCTTACACACTTAGTGACGATCGAAGCAGAAAGGATGAGTGGGAGAGCACGTTTGTATGCATTTGAAATGTCTCAGTATAGAATTTGCTTCGGCGTGTTGTGTATGTAAGTAGTAGATGCAATTGAGCAGGAAACAAAAATACGTTAGAAGATTGCTAGCAAACTCGGTTTTGAAACGATAATTCAATCAAAAGCTGACATAGTAACTATGTGTGTGCCTCTGTGTGTGAGCGGAATGTAGCGGGA]
consensusID : consensus_4586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[ATTCCTGTCGCTATGAATATTTTAATCCCTTGGTTTGCAATAGATTTTCGCTCGTTCATTAGATGAGAGCAAAAATTGTACTTAACACGGCGAAGCACGAATGTATTGTGGTGACTGACGAATGGAAATGATCCACACGACGACGTCGTCCGACCGCGACAGCCAAATCGACACGCTGTTGAAGACGATCGCTAAGGACCCGTCGCCCTCGCTGCACGGTGTGGAGTTGAACGATGCTAGTAGCTTTAAGATCACAATCAACAAGACTTCCGAACTGGAGACTAACAACGACACGCTGAAGAAGCTGGCAACGACGCCGCACGCGGAGAAGCCCAACAATCAGATAAAGCTGTCGAACAGCGCGGCAGCGGCGGCCGGTGGTGGCGTCCCGCTGCCTCCAGGAAATCAAGTGCAATATTTTGAAAGGATCGAATGAAGGAAAATATCAAACCATCGCCTATGGACATATCGCCATGGTTAGTGTCGTCCGATGTGGTCACTGGTCCGACCAAGCCCAAGGAGGCAACGATTATTCGAAAATCGGTCATTACAACGCAGTTGTAACGAAAAATCGCCCTTAAGAATCGATGTAAGTAGTAGATGCAATTGAGCAGGAAACAAAAATACGTTAGAAGATTGCTAGCAAACTCGGTTTGAAACGATAATTAATCAAAACCTGACATAGTAACTATGTGTGTGCCTCTGTTGTGTGAGCGGAATGTAGCGGAAAATGCTGACAGCTAGTATAC]
[+] EMBL BX613459 [ATTCCTGTCGCTATGAATATTTTAATCCCTTGGTTTGCAATAGATTTTCGCTCGTTCATTAGATGAGAGCAAAAATTGTACTTAACACGGCGAAGCACGAATGTATTGTGGTGACTGACGAATGGAAATGATCCACACGACGACGTCGTCCGACCGCGACAGCCAAATCGACACGCTGTTGAAGACGATCGCTAAGGACCCGTCGCCCTCGCTGCACGGTGTGGAGTTGAACGATGCTAGTAGCTTTAAGATCACAATCAACAAGACTTCCGAACTGGAGACTAACAACGACACGCTGAAGAAGCTGGCAACGACGCCGCACGCGGAGAAGCCCAACAATCAGATAAAGCTGTCGAACAGCGCGGCAGCGGCGGCCGGTGGTGGCGTCCCGCTGCCTCCAGGAAATCAAGTGCAATATTTTGAAAGGATCGAATGAAGGAAAATATCAAACCATCGCCTATGGACATATCGCCATGGTTAGTGTCGTCCGATGTGGTCACTGGTCCGACCAAGCCCAAGGAGGCAACGATTATTCGAAAATCGGTCATTACAACGCAGTTGTAACGAAAAATCGCCCTTAAGAATCGATGTAAGTAGTAGATGCAATTGAGCAGGAAACAAAAATACGTTAGAAGATTGCTAGCAAACTCGGTTTGAAACGATAATTAATCAAAACCTGACATAGTAACTATGTGTGTGCCTCTGTTGTGTGAGCGGAATGTAGCGGAAAATGCTGACAGCTAGTATAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4586#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCCCAAGGAGGCAACGATTATTCGAAAATCGGT 60
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 CATTACAACGCAGTTGTAACGAAAAATCGCCCTTAAGAATCGATGTAGGTAGGAACAGAG 120
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 TTAAGGTTGGTAGGGATCCATAATGTTAGGCGCTTATTTTATGTGTGCATGAGGGATCGA 180
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 TAATTCCTGTCGCTATGAATATTTTAATCCCTTGGTTTGCAATAGATTTTCGCTCGTTCA 240
consensus_4586#1 --ATTCCTGTCGCTATGAATATTTTAATCCCTTGGTTTGCAATAGATTTTCGCTCGTTCA 58
**********************************************************
consensus_4586#0 TTAGATGAGAGCAAAAATTGTACTTAACACGGCGAAGCACGAATGTATTGTGGTGACTGA 300
consensus_4586#1 TTAGATGAGAGCAAAAATTGTACTTAACACGGCGAAGCACGAATGTATTGTGGTGACTGA 118
************************************************************
consensus_4586#0 CGAATGGAAATGGTCCACTGAGGTGGATGCTGCTAGGACGATACATGTTGGTAGTGTATG 360
consensus_4586#1 CGAATGGAAATGATCCAC--ACGACGACGTCGTCCGACCGCGACAGCCAAATCG-ACACG 175
************ ***** * * ** * * * ** *** * * * *
consensus_4586#0 TCACTGACAAACAGTCGAACACTGTTAGGGTGCTTCTTCTTATGTTGTGTTGTTGTGAAG 420
consensus_4586#1 CTGTTGA-----AGACGATCGCTA--AGGACCCGTCGCCCT-CGCTGCACGGT-GTGGAG 226
*** ** *** * ** *** * ** * * * ** ** *** **
consensus_4586#0 CCGAGAAAATAAAAGGAATGCCGCATTAGTATTAGATGTGATCTCAGTACATTCCACTGT 480
consensus_4586#1 TTGAACGA----------TGC--TAGTAGCTTTAA----GATC-----ACAATCAAC--- 262
** * *** * *** *** **** *** ** **
consensus_4586#0 GGTGAAAACGGTCCGATGTTTCGTCTCGACTGAATTGCACTCGTTCCTCACCGCAAACAC 540
consensus_4586#1 ----AAGACT-TCCGA------------ACTGGAGACTAACAACGACACGCTG--AAGAA 303
** ** ***** **** * * * * * * ** *
consensus_4586#0 GCCAGCTACTGAACAGTATGTAATATGATACAACGAATTTTAAACAATGAATAGAAGCTA 600
consensus_4586#1 GCTGGCAACGACGCCGCACGCGGAGAAGCCCAACAA---TCAGATAA--------AGCT- 351
** ** ** * * * * **** * * * * ** ****
consensus_4586#0 GATGAATCACAGCATAGCCCAAACGCGATTGTGTGGTGGCAGCATTGCATTCATTACGGT 660
consensus_4586#1 GTCGA---ACAGCGCGGC--AGCGGCGGCCG-GTGGTGGC-GTCCCGC-TGCCTCCAGGA 403
* ** ***** ** * *** * ******** * ** * * * **
consensus_4586#0 GATCGTAAATATGCTTCCACAACGCTATGGTAGTAAAGCAATATTCAATTGTCGGTCATT 720
consensus_4586#1 AATCAAGTGCAATATTTTGAAAGGAT-CGAATGAAGGAAAATATCAAACCATCGCCTATG 462
*** * ** ** * * * * * ***** ** *** **
consensus_4586#0 TTAGTTTTGCTCGCTATAAATTGAAAATGTGCTTAGTGGTTCTGTCCTTGAATATGATGT 780
consensus_4586#1 GACATATCGCC-----------------ATGGTTAGTG------TCGTCCGATGTGGT-- 497
* * ** ** ****** ** * ** ** *
consensus_4586#0 AGCATTGTCTTCAAAAGGTATTACAAAAAAGTGACCTTACACACTTAGTGACGATCGAAG 840
consensus_4586#1 --CACTGGTCCGACCAAGC----CCAAGGAG----------------GCAACGATT--AT 533
** ** * * * * ** ** * ***** *
consensus_4586#0 CAGAAAGGATGAGTGGGAGAGCACGTTTGTATGCATTTGAAATGTCTCAGTATAGAATTT 900
consensus_4586#1 TCGAAA--ATCGGT---------CATTACAACGCAGTTGTAACG---------AAAAATC 573
**** ** ** * ** * *** *** ** * * ** *
consensus_4586#0 GCTTCGGCGTGTTGTGTATGTAAGTAGTAGATGCAATTGAGCAGGAAACAAAAATACGTT 960
consensus_4586#1 GCCCTTAAGAATCG---ATGTAAGTAGTAGATGCAATTGAGCAGGAAACAAAAATACGTT 630
** * * * *******************************************
consensus_4586#0 AGAAGATTGCTAGCAAACTCGGTTTTGAAACGATAATTCAATCAAAAGCTGACATAGTAA 1020
consensus_4586#1 AGAAGATTGCTAGCAAACTCGGTTT-GAAACGATAATT-AATCAAAACCTGACATAGTAA 688
************************* ************ ******** ************
consensus_4586#0 CTATGTGTGTGCCTCTGT-GTGTGAGCGGAATGTAGCGGGA------------------- 1060
consensus_4586#1 CTATGTGTGTGCCTCTGTTGTGTGAGCGGAATGTAGCGGAAAATGCTGACAGCTAGTATA 748
****************** ******************** *
consensus_4586#0 -
consensus_4586#1 C 749
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||