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Anopheles gambiae
cluster # 459 cluster # 459       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_459#0 length = 711 sequences # 1  
consensus_459#1 length = 705 sequences # 1  

consensusID : consensus_459#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence
                              [CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATCGCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGTGCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC]

[+] EMBL BM575070             [CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATCGCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGTGCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC]


>consensus_459#0 CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATC GCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGT GCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTC GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGC GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC



consensusID : consensus_459#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC]

[+] EMBL BM648160             [CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC]


>consensus_459#1 CCGCGGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTCGGGCTCGAGGG GCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAACTTCCACAAGCC TTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTAAACCACGGTCT GGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTGAAGCTCTGGTC GCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGGCAGCAGATAGT CGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAGCAGCTGCTCAC CCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGCGACATACTCGA GACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGCGACGCGTTCCT GTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTCCTGCTGCCCGC GGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCAACGAGGCTGCA GAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCGACGCCCATGTC GTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_459#0      CCGCGGTACTTTGCGGCAATTCTCGCCGGGAGTTGGGTGCGGAGTGCGGGCAGCGTGATC 60
consensus_459#1      ------------------------------------------------------------
                                                                                 

consensus_459#0      GCCCTGCCCGGCTACTCGTACGCGGCAGTGCACTTTGCGCTCTGCCACATCTACTCCGGT 120
consensus_459#1      ------------------------------------------------------------
                                                                                 

consensus_459#0      GCCTCCCATCCGCCGGAGGGCATCAGCCTGATGGAACTGGCCGCACTGTCCGATCTGCTC 180
consensus_459#1      ---------CCGC--GGACGCGTGGGCGGACGCGTGGGGGCCGCCCTGTCCGATCTGCTC 49
                              ****  *   ** *  **      *    ****** ***************

consensus_459#0      GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC 240
consensus_459#1      GGGCTCGAGGGGCTGAAGGAGGTGACGGCGTACGCGCTGAAAACGAACTACTGTCACAAC 109
                     ************************************************************

consensus_459#0      TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA 300
consensus_459#1      TTCCACAAGCCTTGCGTCGGCTGTATGGACGGTGTGCTGCAGGTGCTCCCGGTGACGCTA 169
                     ************************************************************

consensus_459#0      AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG 360
consensus_459#1      AACCACGGTCTGGACGATCTGTACCGCAAGTGTCTGAAGTGGGTCTGCCGGCACTACGTG 229
                     ************************************************************

consensus_459#0      AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG 420
consensus_459#1      AAGCTCTGGTCGCAGAAGCAGTTTGCGCAGCTGCCGCTCGACGTCGTGCACCGCTGCCGG 289
                     ************************************************************

consensus_459#0      CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG 480
consensus_459#1      CAGCAGATAGTCGCGCATCTCAGCTCGGAAAGTGTACTTACCACGATACTGGACAGCGAG 349
                     ************************************************************

consensus_459#0      CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCTGTGGAGGTGGAAAACGTGGTGCGC 540
consensus_459#1      CAGCTGCTCACCCTGCTGCACCCGTACAAGTGGTCGGTGGAGGTGGAAAACGTGGTGCGC 409
                     *********************************** ************************

consensus_459#0      GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC 600
consensus_459#1      GACATACTCGAGACGGCGTACGACTACATTGCGGACCACTTTGCGTCGCTGCTTGCGAGC 469
                     ************************************************************

consensus_459#0      GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC 660
consensus_459#1      GACGCGTTCCTGTCGCTCGGCCAAAACTATCGCTGGGCGATACCGCACCTGGAGCCGGTC 529
                     ************************************************************

consensus_459#0      CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGGCTGCAAAAGCTAC--------- 711
consensus_459#1      CTGCTGCCCGCGGCCAACAATCTCAGCCCCGATCAGGCCTGCAAAAGCTACCCGCGGGCA 589
                     ************************************* *************         

consensus_459#0      ------------------------------------------------------------
consensus_459#1      ACGAGGCTGCAGAAGCTGCTGCAGGCCAAAGTGCTAACCATGACGACGACCACCTCGTCG 649
                                                                                 

consensus_459#0      --------------------------------------------------------
consensus_459#1      ACGCCCATGTCGTCGAGCGACAACACGAACGTGGTGAACGTGTACGACAAGCAAGC 705
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)