cluster # 4590

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4590 cluster # 4590 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4590#0 length = 956 sequences # 1

consensus_4590#1 length = 723 sequences # 2

consensusID : consensus_4590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 956
fasta sequence

                              [AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCTGTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAGCAGGTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTAATAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATGTGCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTGTCCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAACAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG]

[+] EMBL CNS08FTY             [AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCTGTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAGCAGGTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTAATAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATGTGCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTGTCCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAACAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG]




>consensus_4590#0
AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCT
GTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAGCAG
GTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCAC
GAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGT
AAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTAA
TAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATGT
GCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTGT
CCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAACC
GAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGA
ACGCTGAGCGAACAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCA
TCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGT
ACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGATCC
TGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGAC
CCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGACA
ATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGC
GGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG

consensusID : consensus_4590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 723
fasta sequence

                              [ACACCACTGTTGTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCATGGGTACAGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCGCACGCTGCGGCGCATGATACGCACCTA]

[+] EMBL BX627040             [ACACCACTGTTGTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCATGGGTACAGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACT                                                                                          ]
[+] EMBL BM654045             [                                                                 ccGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCGCACGCTGCGGCGCATGATACGCACCTA]




>consensus_4590#1
ACACCACTGTTGTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCAT
GGGTACAGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGC
GGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGT
GGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCG
CCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGA
GGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAA
GACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTT
CCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTAC
GACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCAT
GAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGC
GGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAA
CCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCGCACGCTGCGGCGCATGATACGCAC
CTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4590#0      AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCT 60
consensus_4590#1      -------------------------------------------------ACACCACTGTT 11
                                                                       ********* *

consensus_4590#0      GTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAG-CA 119
consensus_4590#1      GTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCATGGGTACAGGCA 71
                      *********** ********  * **** ****** ***** ***** *** ***** **

consensus_4590#0      GGTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCA 179
consensus_4590#1      GGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCA 131
                      ** **** * * ********************************* **************

consensus_4590#0      CGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTG 239
consensus_4590#1      CGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTG 191
                      ************************************************************

consensus_4590#0      TAAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTA 299
consensus_4590#1      TAAAG------------------------------------------------------- 196
                      *****                                                       

consensus_4590#0      ATAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATG 359
consensus_4590#1      ------------------------------------------------------------
                                                                                  

consensus_4590#0      TGCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTG 419
consensus_4590#1      ------------------------------------------------------------
                                                                                  

consensus_4590#0      TCCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAAC 479
consensus_4590#1      ----------------------------------------AATAACCTAAGCATGGCAAC 216
                                                              ********************

consensus_4590#0      CGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCG 539
consensus_4590#1      CGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCG 276
                      ************************************************************

consensus_4590#0      AACGCTGAGCGAA-CAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTT 598
consensus_4590#1      AACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTT 336
                      ************* **********************************************

consensus_4590#0      CATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCT 658
consensus_4590#1      CATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCT 396
                      ************************************************************

consensus_4590#0      GTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGAT 718
consensus_4590#1      GTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGAT 456
                      ************************************** *********************

consensus_4590#0      CCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCG 778
consensus_4590#1      CCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCG 516
                      ************************************************************

consensus_4590#0      ACCCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGA 838
consensus_4590#1      ACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGA 576
                      ************ ***************************************** *****

consensus_4590#0      CAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGT 898
consensus_4590#1      CAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGT 636
                      ************************************************************

consensus_4590#0      GCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG-- 956
consensus_4590#1      GCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCG 696
                      ************************************ ***** ***************  

consensus_4590#0      ---------------------------
consensus_4590#1      CACGCTGCGGCGCATGATACGCACCTA 723