cluster # 4597

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Anopheles gambiae
cluster # 4597 cluster # 4597 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4597#0 length = 1185 sequences # 2

consensus_4597#1 length = 296 sequences # 1

consensusID : consensus_4597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1185
fasta sequence

                              [CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGCATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCACGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGTGGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGCTTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCTCTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTTGGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGAAACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCTTTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTGTTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAGTGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTCCTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATAGACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACACCGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGCGGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCAGTGATGGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTACTATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAAACTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT]

[+] EMBL BM654047             [CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGCATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCACGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGTGGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGCTTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCTCTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTTGGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGAAACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCTTTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTGTTTATGCTTATGTCTGACGGTCATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX614648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATCCCAGAATCTTGTTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAGTGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTCCTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATAGACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACACCGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGCGGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCAGTGATGGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTACTATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAAACTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT]




>consensus_4597#0
CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGC
ATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCA
CGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGT
GGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGC
TTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCT
CTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTT
GGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGA
AACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCT
TTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTG
TTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAG
TGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTC
CTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATA
GACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACAC
CGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGC
GGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCA
GTGATGGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTAC
TATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAAA
CTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGAC
GGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTG
ATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT

consensusID : consensus_4597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [AGGCAGAATCGCGCACGAGGTNAAAAAAAACAAAACCTACACACCCAAACCAAGGTACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACGAGATAGGGAGAGCGAGCGAGCGCAATGAATGAAAACATCCCAGCAGACACAAAATGCAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATAATAATAATATGAATAATAAAGAAAAAAAAATATATTGAAAGGTAATTATAATTAATGCAA]

[+] EMBL BX468801             [AGGCAGAATCGCGCACGAGGTNAAAAAAAACAAAACCTACACACCCAAACCAAGGTACGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGATAAGATAAAGCGAGCGACGAGATAGGGAGAGCGAGCGAGCGCAATGAATGAAAACATCCCAGCAGACACAAAATGCAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATAATAATAATATGAATAATAAAGAAAAAAAAATATATTGAAAGGTAATTATAATTAATGCAA]




>consensus_4597#1
AGGCAGAATCGCGCACGAGGTNAAAAAAAACAAAACCTACACACCCAAACCAAGGTACGG
AGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATTGAT
AAGATAAAGCGAGCGACGAGATAGGGAGAGCGAGCGAGCGCAATGAATGAAAACATCCCA
GCAGACACAAAATGCAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATAATAA
TAATATGAATAATAAAGAAAAAAAAATATATTGAAAGGTAATTATAATTAATGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4597#0      CCGGGACGGCATGGTTAAGGATTGAACGGACGCGTCAAAGCGAAACGATCTGATCTGGGC 60
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      ATGAAGGGGAGATGCGAGGGACGGGAAGTTATTGAATTTTGATGCAAAGCAGCAACGCCA 120
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      CGCATCGTTTTGCGGGGATAAAAATAGTTCCAACTGTTTATTTCGCTTCATGCTACGGGT 180
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      GGAACAGTTCGGAATGTGATTCCGGCTTTAGCACTGTACTGTTTCATGTGTTTACCGTGC 240
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TTCCGTGCCGTTATATGAACTATGGGCATTACTTCATTATCTTTTTCTTTCTCTCCATCT 300
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      CTCTCTCTCTCTTTCTCTCTGTCTCTCTTTCTTTAGTTTTCTCTCTTTTTATCCGTGGTT 360
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      GGACAGTAGTGCCGATCCTATGACGGTACCTGCCTCTAGCTCAACTTTACCGCAAATGGA 420
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      AACATTGCATGTTTACGGAACTCCTCATTACGTGATGATGTGGAGGCCGGTCTTTGATCT 480
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TTGCGAATCGTTTCATCTGCCGGGTGGCTTCTTTTTGGTTTGTGCCATCCCAGAATCTTG 540
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TTTATGCTTATGTCTGACGGTCATGCGGCAACATTCAATTGCCACCCTCACCCACATTAG 600
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TGACCAGGTCATCTGTTTCTATTTTTCTGTTTTTTTTTAATCTATGTTCCTTCAACCTTC 660
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      CTTCCTCCCCTTCAAAGGACAGATACTCAAGCAGAATGTTTAAGAGTGTTTCTTAGGATA 720
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      GACGAACGTTTGTGGGTATGAGTGTGTGTGTGTGTGTGTCGTTTTTCACGCAATTCACAC 780
consensus_4597#1      ---------------------------------AGGCAGAATCGCGCACGAGGTNAAAAA 27
                                                         *     *    ****   *  * * 

consensus_4597#0      CGCACATAGCTCCACATGCATGCTTGGGAATGGTAGAATTTATCAAGAAAAGTTATTTGC 840
consensus_4597#1      AAACAAAACCTACACACCCAAACCAAGGTACGGAGAAAACTAGCAGCAAACACACAAAAT 87
                           * * ** ****  **  *   ** * **   **  ** **  ***          

consensus_4597#0      GGGAAAGAAAAAAAACAGCCAACCAGATATCTCTTTAATTAATAATGCGTAACGAGAGCA 900
consensus_4597#1      TGGAATGAAAAAAAATA-------AAATA---CTTTAATTGATAAGATAAAGCGAGCGAC 137
                       **** ********* *       * ***   ******** ****     * **** *  

consensus_4597#0      GTGAT-GGGAGAGCGATAATACTTCAACATATTACAACTACTACTACTAACTAACAACTA 959
consensus_4597#1      GAGATAGGGAGAGCGA-GCGAGCGCAATGAATGAAAACATC--CCAGCAGACACAAAATG 194
                      * *** **********    *   ***   ** * ***  *  * *  *   *  ** * 

consensus_4597#0      CTATTCATCGTAATGGTAAAAAGAAAAAAAATAACTATACTATTAAACAATAATACAAAA 1019
consensus_4597#1      CAGAACTTAGTAGTGAGAAACGCAAAAAATGCAGAAATAATA----ATAATAATATGAAT 250
                      *    * * *** **  ***   ******   *   *** **    * *******  ** 

consensus_4597#0      ACTGAGACAAGGGTGAAAGAATGACGAAAAAAAACAAAACCTACACACCCAAACCAAGGA 1079
consensus_4597#1      AATAAAGAAAAAAAAATATATTGA--AAGGTAATTATAATTAATGCAA------------ 296
                      * * *   **     * * * ***  **   **  * **   *  **             

consensus_4597#0      CGGAGAAAACTAGCAGCAAACACACAAAATTGGAATGAAAAAAAATAAAATACTTTAATT 1139
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      GATAAGATAAAGCGAGCGACAGATAGGGAGAGCGAGCGAGCGCAAT 1185
consensus_4597#1      ----------------------------------------------