Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4606 cluster # 4606       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4606#0 length = 951 sequences # 2  
consensus_4606#1 length = 697 sequences # 1  

consensusID : consensus_4606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence
                              [AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGAGACAA-ACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC]

[+] EMBL BX467398             [AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGAGACAA ACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC]
[+] EMBL BM596231             [                                                                                                               ccgGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTT TGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAA GAAGGAAACCACTCAACAGGCAACAC ACACAACACCCATTACGAACAACATTAGCGTGTTTTA                                                                                                                                                                                                                                                                ]


>consensus_4606#0 AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTAT CACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGA AACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAA TTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAA GCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCT TCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAA CTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTT GATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCC ACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGT GCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGT TTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGA GACAAACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGG TAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCN CTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACC ACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAAT TCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC



consensusID : consensus_4606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence
                              [GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATTGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCACCTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAACCTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACCATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATCTCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC]

[+] EMBL AL931185             [GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATTGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCACCTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAACCTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACCATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATCTCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC]


>consensus_4606#1 GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTC AGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAAT TGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCAC CTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAAC CTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCT TTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAA CACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACC ATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGC GCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGC AGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATC TCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTG CAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4606#0      AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTAT 60
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      CACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGA 120
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      AACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAA 180
consensus_4606#1      ---------------------------------------------GCAAGAATC-----G 10
                                                                   * *** **       

consensus_4606#0      TTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAA 240
consensus_4606#1      CCCGAGGTGCTGATCC-TCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAG---TGAA 66
                         ***    ** *   *    *   *  * * * *     * * * *   **     **

consensus_4606#0      GCAAATCTAACGATAGAAGAGTAAATTCAACCCA-GTCTAGAAACGACGAGTATACAACC 299
consensus_4606#1      ACGATTCT-----TCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATT 121
                       * * ***     * *   * *   ** **  *   * *  ** **      **  **  

consensus_4606#0      TTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCA 359
consensus_4606#1      GTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTT---CTAAATATGTTTC 178
                       * ***   *   *  * *   ** ** *    ***     *     * ** ** **   

consensus_4606#0      ACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATT 419
consensus_4606#1      ACCTGGTCAACCAGCTCG--ATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGC 236
                      **  ***  *   ***    **** * **  * *    *  ***  *   *    ***  

consensus_4606#0      TGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGC 479
consensus_4606#1      -GAACCTC-TACGG---GGAGCTGGATAGTGGAATGCAACACGAATCAAAA--------T 283
                       ** **** *** *   * * *** *  ***   *  **   *  *  **          

consensus_4606#0      CACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAG 539
consensus_4606#1      CACT--GGGGTGGACTCCTTTACCTAA------AACTTA-TCA--CGATACCGACGATGG 332
                      ****  *  *** ** * ** *   *       **** * ***  ****    *   * *

consensus_4606#0      TGCATGGGGAGCAG-TGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGC 598
consensus_4606#1      GCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACC 392
                         ***  *** *   * * *****   **      *  *  **   *  *     *  *

consensus_4606#0      GTTTTGCGAGCCGTTTGCATATGCCTAGCC-TAAGGAAGGAAACCACTCAACAGGCAANA 657
consensus_4606#1      AAATCAATATTCA--TGCAAAATTTTAACCATGCTACACGGCACTACTTA-CAAATTAGA 449
                         *    *  *   **** *    ** ** *     * *  ** *** * **    * *

consensus_4606#0      CGAGACAAACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCG 717
consensus_4606#1      CGCANCAT-CNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAG 508
                      **   **  *      **   * * * * ** * **  ****  * *        *   *

consensus_4606#0      TGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAG 777
consensus_4606#1      AGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAA 568
                       ** *  *     ** *      *        *   * * *  * *          * * 

consensus_4606#0      GCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACC 837
consensus_4606#1      CGACGCAGCTATACAACCCTCTCATATCTATC--TCTCTACANTACTACGCCAAA-CATT 625
                         *      *   ** **  *   *   * *    * ***  **  ** *  *   *  

consensus_4606#0      ACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATT 897
consensus_4606#1      ACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCT---GGGCTAGANTGGCCTC 682
                      **   **  * *  *  *      ** * *       *  *   ***  * * *  * * 

consensus_4606#0      AATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC 951
consensus_4606#1      TACNCTACTCTACGC--------------------------------------- 697
                       *  *  * *                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)