These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence [AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGAGACAA-ACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC] [+] EMBL BX467398 [AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGAGACAA ACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC] [+] EMBL BM596231 [ ccgGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTT TGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAA GAAGGAAACCACTCAACAGGCAACAC ACACAACACCCATTACGAACAACATTAGCGTGTTTTA ] consensusID : consensus_4606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATTGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCACCTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAACCTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACCATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATCTCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC] [+] EMBL AL931185 [GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATTGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCACCTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAACCTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACCATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATCTCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4606#0 AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTAT 60 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGA 120 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 AACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAA 180 consensus_4606#1 ---------------------------------------------GCAAGAATC-----G 10 * *** ** consensus_4606#0 TTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAA 240 consensus_4606#1 CCCGAGGTGCTGATCC-TCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAG---TGAA 66 *** ** * * * * * * * * * * * * ** ** consensus_4606#0 GCAAATCTAACGATAGAAGAGTAAATTCAACCCA-GTCTAGAAACGACGAGTATACAACC 299 consensus_4606#1 ACGATTCT-----TCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATT 121 * * *** * * * * ** ** * * * ** ** ** ** consensus_4606#0 TTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCA 359 consensus_4606#1 GTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTT---CTAAATATGTTTC 178 * *** * * * * ** ** * *** * * ** ** ** consensus_4606#0 ACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATT 419 consensus_4606#1 ACCTGGTCAACCAGCTCG--ATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGC 236 ** *** * *** **** * ** * * * *** * * *** consensus_4606#0 TGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGC 479 consensus_4606#1 -GAACCTC-TACGG---GGAGCTGGATAGTGGAATGCAACACGAATCAAAA--------T 283 ** **** *** * * * *** * *** * ** * * ** consensus_4606#0 CACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAG 539 consensus_4606#1 CACT--GGGGTGGACTCCTTTACCTAA------AACTTA-TCA--CGATACCGACGATGG 332 **** * *** ** * ** * * **** * *** **** * * * consensus_4606#0 TGCATGGGGAGCAG-TGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGC 598 consensus_4606#1 GCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACC 392 *** *** * * * ***** ** * * ** * * * * consensus_4606#0 GTTTTGCGAGCCGTTTGCATATGCCTAGCC-TAAGGAAGGAAACCACTCAACAGGCAANA 657 consensus_4606#1 AAATCAATATTCA--TGCAAAATTTTAACCATGCTACACGGCACTACTTA-CAAATTAGA 449 * * * **** * ** ** * * * ** *** * ** * * consensus_4606#0 CGAGACAAACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCG 717 consensus_4606#1 CGCANCAT-CNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAG 508 ** ** * ** * * * * ** * ** **** * * * * consensus_4606#0 TGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAG 777 consensus_4606#1 AGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAA 568 ** * * ** * * * * * * * * * * consensus_4606#0 GCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACC 837 consensus_4606#1 CGACGCAGCTATACAACCCTCTCATATCTATC--TCTCTACANTACTACGCCAAA-CATT 625 * * ** ** * * * * * *** ** ** * * * consensus_4606#0 ACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATT 897 consensus_4606#1 ACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCT---GGGCTAGANTGGCCTC 682 ** ** * * * * ** * * * * *** * * * * * consensus_4606#0 AATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC 951 consensus_4606#1 TACNCTACTCTACGC--------------------------------------- 697 * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||