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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCGAGATTTCCTTCAACTGTTCCTTACTTTCATTGGTTGAGGTTTTACCAATGTATGTGGACGTAAAATTGACGTAGTTTCAACATTCGACGTACCAAACCAAACGACAACCCCAAATTCCCCAAAACTGCTGACACGCGATAGGGCCACACTGTCCCCCCGAATGTCCCCCCCCCCCGGGCTCGATGATGCCGGGCGATCGCGAACTCGTACAAGTACAATCATCGTTCCAACGCACGATCGTTCAACCTGGAGCAACTTACAGTAGCAGAGTACACATTTCCGTTCCGGGTTTTGAATTCCGTTTTTTCGTAATCAATTCCGTCCGTTTTCCGGTGTGTGCGCGTGTGTTGTTGTGTAGTGCGTTTAGTGCATTGTGCTTGGTATTTATCGAAGCATTTGAGGACGCTGTGTGTCTGTGTGCGTTTACAGTGTGTCTCTGTATATGTGGTTGTGTTTTAGGATGTGAACCTATACCCTGAACGTTTGTCTCGTTTCAAGTAAGCCTACAACGCGACGACGATGGCTTAAGCGTTGGGATCGATACGAGTCTAATGGGGATGATCCTTGTACTATAGGTTCGTCAAAGTTCGACGAAAGTATCTACGCTTCATGACAAAAAGGAACCGTGTTTTGAATGTGTACAATATCGTTTAGTGTCTTTCACGCCCCTTTTTCGTTCGGCTTC]
[+] EMBL BM624909 [CCGAGATTTCCTTCAACTGTTCCTTACTTTCATTGGTTGAGGTTTTACCAATGTATGTGGACGTAAAATTGACGTAGTTTCAACATTCGACGTACCAAACCAAACGACAACCCCAAATTCCCCAAAACTGCTGACACGCGATAGGGCCACACTGTCCCCCCGAATGTCCCCCCCCCCCGGGCTCGATGATGCCGGGCGATCGCGAACTCGTACAAGTACAATCATCGTTCCAACGCACGATCGTTCAACCTGGAGCAACTTACAGTAGCAGAGTACACATTTCCGTTCCGGGTTTTGAATTCCGTTTTTTCGTAATCAATTCCGTCCGTTTTCCGGTGTGTGCGCGTGTGTTGTTGTGTAGTGCGTTTAGTGCATTGTGCTTGGTATTTATCGAAGCATTTGAGGACGCTGTGTGTCTGTGTGCGTTTACAGTGTGTCTCTGTATATGTGGTTGTGTTTTAGGATGTGAACCTATACCCTGAACGTTTGTCTCGTTTCAAGTAAGCCTACAACGCGACGACGATGGCTTAAGCGTTGGGATCGATACGAGTCTAATGGGGATGATCCTTGTACTATAGGTTCGTCAAAGTTCGACGAAAGTATCTACGCTTCATGACAAAAAGGAACCGTGTTTTGAATGTGTACAATATCGTTTAGTGTCTTTCACGCCCCTTTTTCGTTCGGCTTC]
consensusID : consensus_4617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence
[CCGCATCCTTTCACTATAGGTCCAGGTTCGTCAAAGTTGGACGAAAGTATCTACGCTTTATGACAAAAAGGAACCGTGTTTTGAATGTGTACAATATTGTTTAGTGTCTTTCACGCCCCTTTTTCTTTCGGCTTCACAACTGGCAAAGTAATGCGACAGCAAAGAAGTAGTCCCAAGTGCAAATGCTTATTTATTGCAATACTACACTGTAAGAGCATTAGCATATAGCTATACCCTTTTTACGATTAAGTTTCCGTTACTTTTTACTGCTAACCGTTGTAATCGCGTAACCGTTTTATTGTTCTACTTGTATCTTACGCTGTAGTGGCCCGTAGTTTGTTTGGGTGGTCGAAAGCAAAACTAGCAATGAATAGCTTGCCAGCTAGCTAGGGTCGTCGGGTAAGGAGCAGATCGAGCAAATTATGTATGTGAGTTAAGGGAGTTACGGGGTGGCATACGAGAGCGAGAAGCTTACTAGAGGCGAGCGGTTTGCAAAAACGGTGTCAGCGCCACCAACAGAAACAGCTGTAAACTTATTCAAAGTGATATTAGAGCGAGGCAAATCGAGTGAGCGTTTTTTTATATATATGATTAGAATCGTTTTATTACTGACACCCGCGAAGCTGCCTTTCATAGAAGCGATGCAAAAAAAAAGCGAGATGAAATAAGTATTTGG]
[+] EMBL BM588792 [CCGCATCCTTTCACTATAGGTCCAGGTTCGTCAAAGTTGGACGAAAGTATCTACGCTTTATGACAAAAAGGAACCGTGTTTTGAATGTGTACAATATTGTTTAGTGTCTTTCACGCCCCTTTTTCTTTCGGCTTCACAACTGGCAAAGTAATGCGACAGCAAAGAAGTAGTCCCAAGTGCAAATGCTTATTTATTGCAATACTACACTGTAAGAGCATTAGCATATAGCTATACCCTTTTTACGATTAAGTTTCCGTTACTTTTTACTGCTAACCGTTGTAATCGCGTAACCGTTTTATTGTTCTACTTGTATCTTACGCTGTAGTGGCCCGTAGTTTGTTTGGGTGGTCGAAAGCAAAACTAGCAATGAATAGCTTGCCAGCTAGCTAGGGTCGTCGGGTAAGGAGCAGATCGAGCAAATTATGTATGTGAGTTAAGGGAGTTACGGGGTGGCATACGAGAGCGAGAAGCTTACTAGAGGCGAGCGGTTTGCAAAAACGGTGTCAGCGCCACCAACAGAAACAGCTGTAAACTTATTCAAAGTGATATTAGAGCGAGGCAAATCGAGTGAGCGTTTTTTTATATATATGATTAGAATCGTTTTATTACTGACACCCGCGAAGCTGCCTTTCATAGAAGCGATGCAAAAAAAAAGCGAGATGAAATAAGTATTTGG]
[+] EMBL BM607135 [ ccgCAAGTGCAAATGCTTATTTATTGCAATACTACACTGTAAGAGCACTAGCATATAGCTATACCCTTTTTACGATTAAGTTTCCGTTACTTTTTACTGCTAA CGTTGTAACCGCGTAACCGTTTTATTGTTCTACTTGTATCTTACGTTATAGTGGCCCGTAGTTTGTTCGGGTGGTCGAAAGAAAAGCTAGCAATGAATAGCTTGCCAGCTAGCTAGGGTCGTCGGGTAAGGAGCAGATCGAGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4617#0 CCGAGATTTCCTTCAACTGTTCCTTACTTTCATTGGTTGA--GGTTTTACCAATGTATGT 58
consensus_4617#1 CCGCATCCTTTCACTATAGGTCCAGGTTCGTCAAAGTTGGACGAAAGTATCTACGCTTTA 60
*** * * * * *** * **** * ** * * * *
consensus_4617#0 GGACGTAAAATTGACGTAGTTTCAACATTCGACGTACCAA--ACCAAACGACAACCCCAA 116
consensus_4617#1 TGACAAAAAGGAACCGTGTTTTGAATGTGTACAATATTGTTTAGTGTCTTTCACGCCCCT 120
*** *** *** *** ** * ** * ** ***
consensus_4617#0 ATTCCCCAAAACTGC-TGACACGCGA--TAGGGCCACACT------GTCCCCCCGAATGT 167
consensus_4617#1 TTTTCTTTCGGCTTCACAACTGGCAAAGTAATGCGACAGCAAAGAAGTAGTCCCAAGTGC 180
** * ** * ** ** * ** ** *** ** *** * **
consensus_4617#0 CCCCCCCCCCCGGGCTCGATGATGCCGGGCGATCGCGAACTCGTACAAGTACAATCATCG 227
consensus_4617#1 AAATGCTTATTTATTGCAATACTACACTGTAAGAGCATTAGCATATAGCTATACCCTTTT 240
* * ** * * * * ** * ** * ** * * *
consensus_4617#0 TTCCAACGCACGATCGTT-CAACCTGGAGCAACTTACAGTAGCAGAGTACACATTTCCGT 286
consensus_4617#1 TACGATTAAGTTTCCGTTACTTTTTACTGCTAACCGTTGTAATCGCGTA-ACCGTTTTAT 299
* * * **** * * ** * *** * *** ** ** *
consensus_4617#0 TCCGGGTTTTGAATTCCGTTTTTTCGTAATCAATTCCGTCCGTTTTCCGGTGTGTGCGCG 346
consensus_4617#1 TGTTCTACTTGTATCTTACGCTGTAGTGGCCCGT--AGTTTGTTTGGGTGGTCGAAAGCA 357
* *** ** * * ** * * ** **** * * **
consensus_4617#0 TGTGTTGTTGTGTAGTGCGT-TTAGTGCATTGTGCTTGGTATTTATCGAAGCATTTGAGG 405
consensus_4617#1 AAACTAGCAATGAATAGCTTGCCAGCTAGCTAGGGTCGTCGGGTAAGGAGCAGATCGAGC 417
* * ** * ** * ** * * * * ** ** * ***
consensus_4617#0 ACGCTGTGTGTCTGTGTGCGTTTACAGTGTGTCTCTGTATATGTGGTTGTGTTTTAGGAT 465
consensus_4617#1 AAATTATGTA----TGTGAGTTAAGGGAGT---------TACGGGGTGGCATACGAGAGC 464
* * *** **** *** * * ** ** * *** * * **
consensus_4617#0 GTGAACCTATACCCTGAACGTTTGTCTCGTTTCAAGTAAGCCTACAACGC-GACGACGAT 524
consensus_4617#1 GAGAAGCT-TACTAGAGGCGAGCGGTTTGCAAAAACGGTGTCAGCGCCACCAACAGAAAC 523
* *** ** *** ** * * * ** * * * * * ** *
consensus_4617#0 GGCT-TAAGC--GTTGGGATCGATACGAGTCTAATGGGGATGATCCTTGTACTATAGGTT 581
consensus_4617#1 AGCTGTAAACTTATTCAAAGTGATATTAG---AGCGAGGCAAATCGAGTGAGCGTTTTTT 580
*** *** * ** * **** ** * * ** *** * * **
consensus_4617#0 CGTCAAAGTTCGACGAAAGTATCTACGCTTCATGACAAAAAGGAACCGTGTTTTGAATGT 641
consensus_4617#1 TAT--ATATATGATTAGAATCGTTTTATTAC-TGACACCCGCGAAGC-TGCCTTTCATAG 636
* * * ** * * * * * * ***** *** * ** ** **
consensus_4617#0 GTACAATATCGTTTAGTGTCTTTCACGCCCCTTTTTCGTTCGGCTTC 688
consensus_4617#1 AAGCGATGCAAAAAAAAAGCG---AGATGAAATAAGTATTTGG---- 676
* ** * * * * ** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||