cluster # 4621

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Anopheles gambiae
cluster # 4621 cluster # 4621 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4621#0 length = 897 sequences # 2

consensus_4621#1 length = 702 sequences # 1

consensusID : consensus_4621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 897
fasta sequence

                              [CCGTGCGTGGTGGCGGTACGTTTCATGCGCTAATTAAAGGCGTTATTTATTGTGTAGTTTATGCTGCAAATTAGTCCCGTTATTCAGCAGTCTCTCGCCATTCGGTTTGTGTGTGTGCGTGTGTGTGCTGGGTGTGGGCGCGGGCTCTACATACGTATAAATCCGTCGCCGCAGAACGGTGTGGTGTGTATGCGCAGCAAGCTTAGAAATGCCAAATATGGAAACGCCATGTTTGGCACTGTGCTGGTGTGAGCATCGCATGCGCCTAGCCGCAGCATAATCGTTCCAGGCCAACCAGGCCAACCAGGCACAACGTTGCCTTCGGAGAAGTGCGGAGAAGGAGTGGAAAAATTCGCACCATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAACACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTTTGGCACTACCATTTGCCCAGTCCAGCCCCGGCAGCTTGTAGGCAGCATGTTGCGAGAGTCGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGAAGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCAACCCCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGCCTGGCTGCCGTACAGCCCGTCCGTGACGCAGCTGCTCGAGCGTGCGTACACGAAAAATCTGACGCGCGTCCTGCTGAAGGATGCCGATCCCGCCCTCGCCCTGTACGAGGTGGATCTGGTGCAGATGGTGCAGACGCAGCACGGCACGGCGAGCGGGCGCAACACGAGCGTCCGGCGCTGTCTCTAC]

[+] EMBL BM576506             [CCGTGCGTGGTGGCGGTACGTTTCATGCGCTAATTAAAGGCGTTATTTATTGTGTAGTTTATGCTGCAAATTAGTCCCGTTATTCAGCAGTCTCTCGCCATTCGGTTTGTGTGTGTGCGTGTGTGTGCTGGGTGTGGGCGCGGGCTCTACATACGTATAAATCCGTCGCCGCAGAACGGTGTGGTGTGTATGCGCAGCAAGCTTAGAAATGCCAAATATGGAAACGCCATGTTTGGCACTGTGCTGGTGTGAGCATCGCATGCGCCTAGCCGCAGCATAATCGTTCCAGGCCAACCAGGCCAACCAGGCACAACGTTGCCTTCGGAGAAGTGCGGAGAAGGAGTGGAAAAATTCGCACCATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAACACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTTTGGCACTACCATTTGCCCAGTCCAGCCCCGGCAGCTTGTAGGCAGCATGTTGCGAGAGTCGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGAAGCCACTG                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM613092             [                                                                                                                                                                                                                                                  ccgGGTGTGAGCATCGCATGCGCCTAGCCGCAGCATAATCGTTCCAGGCCAACCAGGCCAACCAGGCACAACGTTGCCTGCGGAGAAGTGCGGAGAAGGAGTGGAAAAATTCGCACCATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAACACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTTTGGCACCACCATTTGCCCAGTCCAGCCCCGGCAGCTTGTAGGCAGCATGTTGCGAGAGTCGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGAAGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCAACCCCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGCCTGGCTGCCGTACAGCCCGTCCGTGACGCAGCTGCTCGAGCGTGCGTACACGAAAAATCTGACGCGCGTCCTGCTGAAGGATGCCGATCCCGCCCTCGCCCTGTACGAGGTGGATCTGGTGCAGATGGTGCAGACGCAGCACGGCACGGCGAGCGGGCGCAACACGAGCGTCCGGCGCTGTCTCTAC]




>consensus_4621#0
CCGTGCGTGGTGGCGGTACGTTTCATGCGCTAATTAAAGGCGTTATTTATTGTGTAGTTT
ATGCTGCAAATTAGTCCCGTTATTCAGCAGTCTCTCGCCATTCGGTTTGTGTGTGTGCGT
GTGTGTGCTGGGTGTGGGCGCGGGCTCTACATACGTATAAATCCGTCGCCGCAGAACGGT
GTGGTGTGTATGCGCAGCAAGCTTAGAAATGCCAAATATGGAAACGCCATGTTTGGCACT
GTGCTGGTGTGAGCATCGCATGCGCCTAGCCGCAGCATAATCGTTCCAGGCCAACCAGGC
CAACCAGGCACAACGTTGCCTTCGGAGAAGTGCGGAGAAGGAGTGGAAAAATTCGCACCA
TTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAACAC
ACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTTTG
GCACTACCATTTGCCCAGTCCAGCCCCGGCAGCTTGTAGGCAGCATGTTGCGAGAGTCGC
ATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGAAGC
CACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCAACC
CCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGCCTGGCTGCCG
TACAGCCCGTCCGTGACGCAGCTGCTCGAGCGTGCGTACACGAAAAATCTGACGCGCGTC
CTGCTGAAGGATGCCGATCCCGCCCTCGCCCTGTACGAGGTGGATCTGGTGCAGATGGTG
CAGACGCAGCACGGCACGGCGAGCGGGCGCAACACGAGCGTCCGGCGCTGTCTCTAC

consensusID : consensus_4621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 702
fasta sequence

                              [CGAGGCCAGAATCGCCACGAGNGTAGAGCACAACGTTGCCTTCGGAGCNAAGTGCGGAGAAGGAGTGGAAAAATTCGCACCATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAACACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTTTGGCACCACCATTTGCCCAGTCCAGCCCCTGGCAGCTTGTAGGCAGCATGTTGCGAGAGTCGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGAAGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCAACCCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGGCTGGCTGCCGTACAGCCCGTCCGTTGACGCAGCTGCTCGAGCGTGCCGTACACGAAAAATCTGACGCGCGTCCTGACTGAAAGGATGCCGATCCCGGCCTNCGCCCTGTACNCGAGGTGGACTCTTGGTGCANATGGTGCAGACGCAGGCAACGGGCACAGGCGAGCCGGGGCGCNAAACANCGAGCCGTCCGGCGCTAGTCCTCTAACCCGNCCGAAACTCCGNCCGGCGACGANGGGCATCACAAAGTGGCGACGTGNGCACGGGNGC]

[+] EMBL BX467267             [CGAGGCCAGAATCGCCACGAGNGTAGAGCACAACGTTGCCTTCGGAGCNAAGTGCGGAGAAGGAGTGGAAAAATTCGCACCATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAACACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTTTGGCACCACCATTTGCCCAGTCCAGCCCCTGGCAGCTTGTAGGCAGCATGTTGCGAGAGTCGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGAAGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCAACCCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGGCTGGCTGCCGTACAGCCCGTCCGTTGACGCAGCTGCTCGAGCGTGCCGTACACGAAAAATCTGACGCGCGTCCTGACTGAAAGGATGCCGATCCCGGCCTNCGCCCTGTACNCGAGGTGGACTCTTGGTGCANATGGTGCAGACGCAGGCAACGGGCACAGGCGAGCCGGGGCGCNAAACANCGAGCCGTCCGGCGCTAGTCCTCTAACCCGNCCGAAACTCCGNCCGGCGACGANGGGCATCACAAAGTGGCGACGTGNGCACGGGNGC]




>consensus_4621#1
CGAGGCCAGAATCGCCACGAGNGTAGAGCACAACGTTGCCTTCGGAGCNAAGTGCGGAGA
AGGAGTGGAAAAATTCGCACCATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAA
GGGCAGCTAGGAAACTGAACACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTAT
TAACCCTGGGCAACGTTTTTTGGCACCACCATTTGCCCAGTCCAGCCCCTGGCAGCTTGT
AGGCAGCATGTTGCGAGAGTCGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCG
GTTGCGGAAAAGTCACCTGAAGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTAC
AAACGAACAAAACAATGTCAACCCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCC
CGATCGGACCGGCTGGCTGCCGTACAGCCCGTCCGTTGACGCAGCTGCTCGAGCGTGCCG
TACACGAAAAATCTGACGCGCGTCCTGACTGAAAGGATGCCGATCCCGGCCTNCGCCCTG
TACNCGAGGTGGACTCTTGGTGCANATGGTGCAGACGCAGGCAACGGGCACAGGCGAGCC
GGGGCGCNAAACANCGAGCCGTCCGGCGCTAGTCCTCTAACCCGNCCGAAACTCCGNCCG
GCGACGANGGGCATCACAAAGTGGCGACGTGNGCACGGGNGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4621#0      CCGTGCGTGGTGGCGGTACGTTTCATGCGCTAATTAAAGGCGTTATTTATTGTGTAGTTT 60
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      ATGCTGCAAATTAGTCCCGTTATTCAGCAGTCTCTCGCCATTCGGTTTGTGTGTGTGCGT 120
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GTGTGTGCTGGGTGTGGGCGCGGGCTCTACATACGTATAAATCCGTCGCCGCAGAACGGT 180
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GTGGTGTGTATGCGCAGCAAGCTTAGAAATGCCAAATATGGAAACGCCATGTTTGGCACT 240
consensus_4621#1      ------------------------------------------------------------
                                                                                  

consensus_4621#0      GTGCTGGTGTGAGCATCGCATGCGCCTAGCCGCAGCATAATCGTTCCAGGCCAACCAGGC 300
consensus_4621#1      ----------------------------------------CGAGGCCAGAATCGCCACGA 20
                                                                   ****     *** * 

consensus_4621#0      CAACCAGGCACAACGTTGCCTTCGGAG--AAGTGCGGAGAAGGAGTGGAAAAATTCGCAC 358
consensus_4621#1      GNGTAGAGCACAACGTTGCCTTCGGAGCNAAGTGCGGAGAAGGAGTGGAAAAATTCGCAC 80
                             ********************  *******************************

consensus_4621#0      CATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAAC 418
consensus_4621#1      CATTGAGCCGTCGTATTGAGTGTATTTATGCGTGTGTAAAGGGCAGCTAGGAAACTGAAC 140
                      ************************************************************

consensus_4621#0      ACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTT 478
consensus_4621#1      ACACCGTGGCAGCAGTACAGACGGCCACTTCCATTAGTATTAACCCTGGGCAACGTTTTT 200
                      ************************************************************

consensus_4621#0      TGGCACTACCATTTGCCCAGTCCAGCCCC-GGCAGCTTGTAGGCAGCATGTTGCGAGAGT 537
consensus_4621#1      TGGCACCACCATTTGCCCAGTCCAGCCCCTGGCAGCTTGTAGGCAGCATGTTGCGAGAGT 260
                      ****** ********************** ******************************

consensus_4621#0      CGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGA 597
consensus_4621#1      CGCATCTAGGATTAGCGTAGAGTTAAGCGTACAGAAAGCGGTTGCGGAAAAGTCACCTGA 320
                      ************************************************************

consensus_4621#0      AGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCA 657
consensus_4621#1      AGCCACTGAGCCGCCCAGAGGGCAAAAAACAAACGCGTACAAACGAACAAAACAATGTCA 380
                      ************************************************************

consensus_4621#0      ACCCCGGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGCCTGGCTG 717
consensus_4621#1      ACCC-GGTGCACCGCGTGGTCGTGTGGGAGCATGAGCTGCCCGATCGGACCGGCTGGCTG 439
                      **** *********************************************** *******

consensus_4621#0      CCGTACAGCCCGTCCGT-GACGCAGCTGCTCGAGCGTGC-GTACACGAAAAATCTGACGC 775
consensus_4621#1      CCGTACAGCCCGTCCGTTGACGCAGCTGCTCGAGCGTGCCGTACACGAAAAATCTGACGC 499
                      ***************** ********************* ********************

consensus_4621#0      GCGTCCTG-CTGAA-GGATGCCGATCCCG-CCCTCGCCCTGTACG--AGGTGGATC--TG 828
consensus_4621#1      GCGTCCTGACTGAAAGGATGCCGATCCCGGCCTNCGCCCTGTACNCGAGGTGGACTCTTG 559
                      ******** ***** ************** **  **********   *******    **

consensus_4621#0      GTGCAGATGGTGCAGACGCAGC--ACGG-CAC-GGCGAGC--GGGCGCAACACGAG---- 878
consensus_4621#1      GTGCANATGGTGCAGACGCAGGCAACGGGCACAGGCGAGCCGGGGCGCNAAACANCGAGC 619
                      ***** ***************   **** *** *******  ****** * **       

consensus_4621#0      CGTCCGGCGCTGTCTCTAC----------------------------------------- 897
consensus_4621#1      CGTCCGGCGCTAGTCCTCTAACCCGNCCGAAACTCCGNCCGGCGACGANGGGCATCACAA 679
                      ***********    **                                           

consensus_4621#0      -----------------------
consensus_4621#1      AGTGGCGACGTGNGCACGGGNGC 702