These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence [TGCAGATNGGCCCGTTATACGTAGAGACACGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATNTCGATAGTGGATTTTCTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGACCACTAGTCCTTTACATTTTTAAAGCTGCTACCAGTATAGATACAAACATGATATCTNTTTTTATTNACGTCCTAATTGCAGCACTCTATACAATCATTTATTTNNCTTGTNTTCGTCTCACAACGGCTCCGAGAACTTTCTTAACGCTGAGGACAATTAATCTGTGATAACTTGTGGCAACATAGCTAGGAAACTGTCCGGGCTGGGTGCAACAAGTTACCACTCCCACGAAATGGGNCAGCACAATACGGATAAACACATGGTGCCCCGGGTGACGCTGGAGAGCACCAGCAGAGCNGCTGTATGCAGCAGACAGCAGAGAGCGCTGCAGCAGCAACNGNGGAGAGGACGANGGGCAGAGGGNGCAGNAGACGGAGAAGGAAGACAAACCAGTTGCNTTCGAAAANACGGGAAACCGCATCTCTNTCTACANCTCAAGTTGTTGGGTATGCTGTCANCACATTCAGGCGCNACCCGAACNAGTACAGAGGGNAAATAAAGAACNANATTNGTTAAATCGNGGACAAGTGGTATTAATTTCCCACTAACAGCAACNACGTAAGTTGCACGCCATNTTTGGGGTCGGGNCNNAAACTATAACGCGAGCAGGNACCATCATTGTTGTTTCGAAACNCAGTNGATTACGACAANGNTCCNGNACCGGCCCACAACAGGAAACCCNAGGCGACCCCCCAGCGCCAGGGG] [+] EMBL AL934625 [TGCAGATNGGCCCGTTATACGTAGAGACACGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATNTCGATAGTGGATTTTCTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGACCACTAGTCCTTTACATTTTTAAAGCTGCTACCAGTATAGATACAAACATGATATCTNTTTTTATTNACGTCCTAATTGCAGCACTCTATACAATCATTTATTTNNCTTGTNTTCGTCTCACAACGGCTCCGAGAACTTTCTTAACGCTGAGGACAATTAATCTGTGATAACTTGTGGCAACATAGCTAGGAAACTGTCCGGGCTGGGTGCAACAAGTTACCACTCCCACGAAATGGGNCAGCACAATACGGATAAACACATGGTGCCCCGGGTGACGCTGGAGAGCACCAGCAGAGCNGCTGTATGCAGCAGACAGCAGAGAGCGCTGCAGCAGCAACNGNGGAGAGGACGANGGGCAGAGGGNGCAGNAGACGGAGAAGGAAGACAAACCAGTTGCNTTCGAAAANACGGGAAACCGCATCTCTNTCTACANCTCAAGTTGTTGGGTATGCTGTCANCACATTCAGGCGCNACCCGAACNAGTACAGAGGGNAAATAAAGAACNANATTNGTTAAATCGNGGACAAGTGGTATTAATTTCCCACTAACAGCAACNACGTAAGTTGCACGCCATNTTTGGGGTCGGGNCNNAAACTATAACGCGAGCAGGNACCATCATTGTTGTTTCGAAACNCAGTNGATTACGACAANGNTCCNGNACCGGCCCACAACAGGAAACCCNAGGCGACCCCCCAGCGCCAGGGG] consensusID : consensus_4623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [TAAAGTGAATACAGTTCGTGAAAGTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACAATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAATAAGAGATTACACAAACTGCATACAATTCTTATACGATCGTAGATTTTTCCAAAACTGTAACTACGACCATGATTTGTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATTCGATAGGGATTTTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGCACCACCTAGTCCTTTACATTTTTAAAGCGCTCCAGTTAGATCAAACATGATTTTTTTTATTAACGTCTAATGCACACTCTTCAATTTTATTTTCTGTATTGTTTAAAGGCTCCGAGAACTTTCTTAACCGAGGACAATTAATCTGTGATACTGTGGAAAATAGTAGGAAATGTCGGGCTGGGTGAAAATTACCACTCCCAAAAATGGGAAGAAATACGGAAAACATGTGCCGTTGCGTGAGAGAAAGAGAGAGTGTATGAGAGAGAGAGAGAGAGCGAGAGAAAGAGAGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAAACAATGTTGAAATGAACCATTTTAAATAGTGTGGTTTGTA] [+] EMBL BX608442 [TAAAGTGAATACAGTTCGTGAAAGTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACAATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAATAAGAGATTACACAAACTGCATACAATTCTTATACGATCGTAGATTTTTCCAAAACTGTAACTACGACCATGATTTGTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATTCGATAGGGATTTTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGCACCACCTAGTCCTTTACATTTTTAAAGCGCTCCAGTTAGATCAAACATGATTTTTTTTATTAACGTCTAATGCACACTCTTCAATTTTATTTTCTGTATTGTTTAAAGGCTCCGAGAACTTTCTTAACCGAGGACAATTAATCTGTGATACTGTGGAAAATAGTAGGAAATGTCGGGCTGGGTGAAAATTACCACTCCCAAAAATGGGAAGAAATACGGAAAACATGTGCCGTTGCGTGAGAGAAAGAGAGAGTGTATGAGAGAGAGAGAGAGAGCGAGAGAAAGAGAGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAAACAATGTTGAAATGAACCATTTTAAATAGTGTGGTTTGTA] [+] EMBL BM592391 [ ccgGTGAAACTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACAATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAAGAAGAGATTACACAAACTGCATACAATTCTTATACGATCGTAGATTATTCCAAAACTGTAACTACGACCATGATTTGTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGTAACAGACAGGAGGATGAAGAAGATCATTCGATAGGGAATTTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGCACCACCTAGTCCTTTACATTTTTAAAGCGCTCCAGTTAGATCAAACATGA TTTTTTTATTAACGTCTAATGCACACTCTTCAATTATATTTTCTCTATTGTTTAAAGGCTCCGAGAACTTTCTTAACCGAGGACAATTAATCTGTGATACTGTGGAAAATAGTAGGAAATGTCGGGCTGGGTGAAAATTACCACTCCCAAAAATATGAAGAAACACGGAAAACATGTGCCGTTGCGTGAGAGAAAGAGAGAGTGTATGAGAGAGAGAGAGc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4623#0 ------------------------------------------------------------ consensus_4623#1 TAAAGTGAATACAGTTCGTGAAAGTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACA 60 consensus_4623#0 ------------------------------------------------------------ consensus_4623#1 ATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAATAAGAGATTACACAAA 120 consensus_4623#0 ------------------------------------------------------------ consensus_4623#1 CTGCATACAATTCTTATACGATCGTAGATTTTTCCAAAACTGTAACTACGACCATGATTT 180 consensus_4623#0 -TGCAGATNGGCCCGTTATACGTAGAGACAC-GAATGACCTCAACCATCATAACGATCAT 58 consensus_4623#1 GTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCAT 240 * * * * * * ************ **************************** consensus_4623#0 CGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATNTCGATAGTGGATTTTCTTT 118 consensus_4623#1 CGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATT-CGATAG-GGATTTT--TT 296 **************************************** ****** ******* ** consensus_4623#0 TGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACC 178 consensus_4623#1 TGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACC 356 ************************************************************ consensus_4623#0 AG-ACCAC-TAGTCCTTTACATTTTTAAAGCTGCTACCAGTATAGATACAAACATGATAT 236 consensus_4623#1 AGCACCACCTAGTCCTTTACATTTTTAAAGC-GCT-CCAGT-TAGAT-CAAACATGAT-- 410 ** ***** ********************** *** ***** ***** ********** consensus_4623#0 CTNTTTTTATTNACGTCCTAATTGCAGCACTCTATACAATCATTTATTTNNCTTGTNTTC 296 consensus_4623#1 -TTTTTTTATTAACGTC-TAAT----GCACACTCTTCAAT--TTTATTTTC--TGTATT- 459 * ******** ***** **** **** ** * **** ******* *** ** consensus_4623#0 GTCTCACAACGGCTCCGAGAACTTTCTTAACGCTGAGGACAATTAATCTGTGATAACTTG 356 consensus_4623#1 GTTT---AAAGGCTCCGAGAACTTTCTTAAC--CGAGGACAATTAATCTGTGATA--CTG 512 ** * ** ********************* ********************* ** consensus_4623#0 TGGCAACATAGCTAGGAAACTGTCCGGGCTGGGTGCAACAAGTTACCACTCCCACGAAAT 416 consensus_4623#1 TGG-AAAATAG-TAGGAAA-TGTC-GGGCTGGGTGAA---AATTACCACTCCCA-AAAAT 564 *** ** **** ******* **** ********** * * ************ **** consensus_4623#0 GGGNCAGCACAATACGGATAAACACATGGTGCCCCGGGTGACGCTGGAGAGCACCAGCAG 476 consensus_4623#1 GGGAAGA---AATACGGA-AAACAT---GTGCC----GTTGCGTGAGAGAA-------AG 606 *** ******** ***** ***** ** ** **** ** consensus_4623#0 AGCNGCTGTATGCAGCAGACAGCAGAGAGCGCTGCAGCAGCAACNGNGGAGAGGACGANG 536 consensus_4623#1 AGAGAGTGTATGAGAGAGAGAG-AGAGAGCG----AGAGAAAGAGAGAGAGAGGGAGAGG 661 ** ****** *** ** ******** ** * ****** ** * consensus_4623#0 GGCAGAGGGNGCAGNAGACGGAGAAGGAAGACAAACCAGTTGCNTTCGAAAANACGGGAA 596 consensus_4623#1 GAGAGAGAGAGAGAGAAACAATGTTGAAA--TGAACCATTTTAAATAGTGTGGTTTGTA- 718 * **** * * * ** * * ** ***** ** * * * * consensus_4623#0 ACCGCATCTCTNTCTACANCTCAAGTTGTTGGGTATGCTGTCANCACATTCAGGCGCNAC 656 consensus_4623#1 ------------------------------------------------------------ consensus_4623#0 CCGAACNAGTACAGAGGGNAAATAAAGAACNANATTNGTTAAATCGNGGACAAGTGGTAT 716 consensus_4623#1 ------------------------------------------------------------ consensus_4623#0 TAATTTCCCACTAACAGCAACNACGTAAGTTGCACGCCATNTTTGGGGTCGGGNCNNAAA 776 consensus_4623#1 ------------------------------------------------------------ consensus_4623#0 CTATAACGCGAGCAGGNACCATCATTGTTGTTTCGAAACNCAGTNGATTACGACAANGNT 836 consensus_4623#1 ------------------------------------------------------------ consensus_4623#0 CCNGNACCGGCCCACAACAGGAAACCCNAGGCGACCCCCCAGCGCCAGGGG 887 consensus_4623#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||