These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGCAACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAGACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAGGACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTCGTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGCCGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACGATCAGAA] [+] EMBL BX608309 [CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGCAACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAGACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAGGACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTCGTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGCCGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACGATCAGAA] consensusID : consensus_4627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCGTACGATTCACGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCCCGTTTTCTCTCCCCCCAGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAATGCACCACTATTTGTAATGTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCAACAATTGTTCGTAACCAATGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACT] [+] EMBL BM592450 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAAATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCGTACGATTCACGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCCCGTTTTCTCTCCCCCCAGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAATGCACCACTATTTGTAATGTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCAACAATTGTTCGTAACCAATGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAACTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAACAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACT] consensusID : consensus_4627#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 115 fasta sequence [GCCCACGCGTCCGGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAA] [+] EMBL BM629599 [GCCCACGCGTCCGGTTTGAACCGCTGTACTCCTATCCTTCCTGTCATATCATTCTCCCCGCAAACTGCGCCTCTCATTACTTTTAAATCCCCGTTCTTTTTATCTCCCCCACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4627#0 CTCGCATCGTCGCCACCGTACGCGGACATGCCCTCGTTCCTGGTGGTCGGCCAGAAGGGC 60 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 ----------------CCGCCCACGCGTCCGCCCACGCGTCCGCAAAATGACTTCTGTAA 44 consensus_4627#0 AACGGATGGGTGAACGGGGACAAGGTGCGGCTCATACGGCTGTCATCGTCGGATGGTAAG 120 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 ATGAAAGTTAGCGTTATGTTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGC 104 consensus_4627#0 ACGAGCGAGCTGCTGCTGGACGATCAGCTGCCGCGGCATCCGGCGACGGTGGACGACCAG 180 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 GTAGGCGCTTATCTGTTCGTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAAT 164 consensus_4627#0 GACGCGCTCGATGCAGCGCTGGAGTGAATGATGATGGTGGATGATGAGGACGCTGTAGTC 240 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 CGGTTCGGTTTCAAATCGTGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTC 224 consensus_4627#0 GTCGACTCGCTCGCAATGCGCTACCGCAAGACCAAACAGGCTCTACTGTATGTGATTCGC 300 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 GCATTATGCGGCATTATGTTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTA 284 consensus_4627#0 CGTTCCGGTGCAAACGGAATGAACCCAGTTTTGTTTTTAATGTTTGAACCGCTGTACTCC 360 consensus_4627#2 ----------------------------GCCCACGCGTCCGGTTTGAACCGCTGTACTCC 32 consensus_4627#1 CACCTCGTACGATTCACGATCAGAACAGAACCAATCGCCACAGATCCTCCACAGTAATCC 344 * ** * *** *** consensus_4627#0 TATCCTTCCTGTCATATCATTCTCCCCGCAAACT-GCGCCTCTCATTACTTT-----TAA 414 consensus_4627#2 TATCCTTCCTGTCATATCATTCTCCCCGCAAACT-GCGCCTCTCATTACTTT-----TAA 86 consensus_4627#1 CGT--TTTCTCTCCCCCCAGTCAGCAAGAACATTCATACATCATACTACCTACAGTGTAA 402 * ** ** ** ** ** * * * * * * ** * *** * *** consensus_4627#0 ATCCCCGTTCTTTTTATCTCCCCCACAAAATGACTTCTGTAAATGAAAGTTAGCGTTATG 474 consensus_4627#2 ATCCCCGTTCTTTTTATCTCCCCCACAAA------------------------------- 115 consensus_4627#1 TGCACCACTATTTGTAATGTTTCGATCAATTGTTTTAGTAAGAGGAGAATCCACGCAGCA 462 * ** * *** ** * * ** consensus_4627#0 TTTTACCGACCGGAACGTTCCGCACTGGGTTCCGCAAGGCGCGTAGGCGCTTATCTGTTC 534 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 ACAATTGTTCGTAACCAATGTAGAGATCTATTTTTAAATAGTAGTAAAATATAAAAACAA 522 consensus_4627#0 GTGTGCACCACGTAAAACCATGATGTCACACGCGGTGGTAATCGGTTCGGTTTCAAATCG 594 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 CTTTAAAAATTCTATGTAAAAGGAATAAGAACAGGAAGTAAGATAACAAACTAAAGGAAA 582 consensus_4627#0 TGTATTTATCCCCCGCAAGCGCACAATTGATTGTACTAATTCGCATTATGCGGCATTATG 654 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 CAAACAAACAAAAAAGAAGCAAACAAGGAACCATAACTTCAGCACT-------------- 628 consensus_4627#0 TTGTATTGTAAATATTGTTAGGTAATTGTTTGTTAATTGTTACACCTCTTACGATCCACG 714 consensus_4627#2 ------------------------------------------------------------ consensus_4627#1 ------------------------------------------------------------ consensus_4627#0 ATCAGAA 721 consensus_4627#2 ------- consensus_4627#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||