cluster # 4629

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Anopheles gambiae
cluster # 4629 cluster # 4629 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4629#0 length = 848 sequences # 2

consensus_4629#1 length = 686 sequences # 1

consensusID : consensus_4629#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 848
fasta sequence

                              [AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACGAGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTGGTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAACAAGCGTACTAAATTCAAAATCACCACCAATCTGCAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATGAAATCTCGAAAGGTGCTGCGGCACAACACCCTGATTCAGGAGATTCTTTCCCAATCGAAAGTGAGTTTC]

[+] EMBL BX627336             [AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACGAGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTGGTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAACAAGCGTACTAAATTCAAAATCACCACCAATCTGCAGAAG                                                                                                                                                            ]
[+] EMBL BX626533             [                                                                                                                                                                                                                                                                                                                                                                                             CCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAACAAGCGTACTAAATTCAAAATCACCACCAATCTGCAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATGAAATCTCGAAAGGTGCTGCGGCACAACACCCTGATTCAGGAGATTCTTTCCCAATCGAAAGTGAGTTTC]




>consensus_4629#0
AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACG
AGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTG
GTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATT
TGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTT
CCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCT
TCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCA
ACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGT
CGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGA
TGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGC
AGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACG
AAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAACAAGCGTA
CTAAATTCAAAATCACCACCAATCTGCAGAAGGAAACGCCGCAGGAGGTGGAGCACACGA
TGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATGA
AATCTCGAAAGGTGCTGCGGCACAACACCCTGATTCAGGAGATTCTTTCCCAATCGAAAG
TGAGTTTC

consensusID : consensus_4629#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGTACTAAATTCAAAATCACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATTGAAATCTCGNAAAGGTGCTGCGGGGAACAANACCCTGGAT]

[+] EMBL BX469685             [TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGTACTAAATTCAAAATCACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATTGAAATCTCGNAAAGGTGCTGCGGGGAACAANACCCTGGAT]




>consensus_4629#1
TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATTTGAACGCAAAATTTA
GCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTTCCGTCAAGGTGCTGC
AGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCTTCGCCATACCGCAGG
AGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCAACTTTAGCGGGCGCA
AGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGTCGTTCGAAAAGCGCA
ACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGATGTTCGAAAACACGG
ACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGCAGGAAATATTCCAAC
GGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACGAAGAGAAAATGAATG
ACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGTACTAAATTCAAAATC
ACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACACGATGAATGCCGTCGA
TGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCATTGAAATCTCGNAAAG
GTGCTGCGGGGAACAANACCCTGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4629#0      AGGATAAAGACGTGTATCAGAAATTCTACAGCCGCATGCTGGCAAAGCGATTAATTCACG 60
consensus_4629#1      ------------------------------------------------------------
                                                                                  

consensus_4629#0      AGCAGTCGCAAAGCATGGATGCGGAAGAATTGATGATTAACAAGCTGAAGCAGGCGTGTG 120
consensus_4629#1      ------------------------------------------------------------
                                                                                  

consensus_4629#0      GTTACGAGTTCACCAACAAGCTGCACCGCATGTTCACCGACATTTCGGTGTCGACGGATT 180
consensus_4629#1      ---------------TCGNCACGAGGTGCATGTTCACCGACATTTCGGTGTCGACGGATT 45
                                      *     *    *********************************

consensus_4629#0      TGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTT 240
consensus_4629#1      TGAACGCAAAATTTAGCAAATATTTGAACGATAACAAACACGAGACTGGTATAAACTTTT 105
                      ************************************************************

consensus_4629#0      CCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCT 300
consensus_4629#1      CCGTCAAGGTGCTGCAGGCTGGTGCATGGCCACTGGGACCAACGCAGGTGGTCGCCTCCT 165
                      ************************************************************

consensus_4629#0      TCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCA 360
consensus_4629#1      TCGCCATACCGCAGGAGTTTGAAAAGTCCATCCGCCTGTTCGAGGAGTTTTACCATATCA 225
                      ************************************************************

consensus_4629#0      ACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGT 420
consensus_4629#1      ACTTTAGCGGGCGCAAGCTAACCTGGCTGCACCATCTGTGCCACGGCGAGATGAAGCTGT 285
                      ************************************************************

consensus_4629#0      CGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGA 480
consensus_4629#1      CGTTCGAAAAGCGCAACTACATCGTCACGATGCAGACGTACCAGATGGCGATACTGCTGA 345
                      ************************************************************

consensus_4629#0      TGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGC 540
consensus_4629#1      TGTTCGAAAACACGGACAAGTACACGTGCAAGGAGCTGCAGACGTCGCTGCAGCTGCAGC 405
                      ************************************************************

consensus_4629#0      AGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACG 600
consensus_4629#1      AGGAAATATTCCAACGGCACCTGCAGAGCCTGGTGGAGGCGAAAATTTTGCTGCTCAACG 465
                      ************************************************************

consensus_4629#0      AAGAGAAAATGAATGACGATACGGAGGNTAGCATTAACGTAAATTATAGCAA-CAAGCGT 659
consensus_4629#1      AAGAGAAAATGAATGACGATACGGAGGTTAGCATTAACGTAAATTATAGCAAGCAAGCGT 525
                      *************************** ************************ *******

consensus_4629#0      ACTAAATTCAAAATCACCACCAATCTGC-AGAAGGAAACGCCGCAGGAGGTGGAGCACAC 718
consensus_4629#1      ACTAAATTCAAAATCACCACCAATCTGCGAGAAGGAAACGCCGCAGGAGGTGGAGCACAC 585
                      **************************** *******************************

consensus_4629#0      GATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCAT 778
consensus_4629#1      GATGAATGCCGTCGATGAGGACCGAAAGATGTATCTACAGGCAGCGATCGTACGCATCAT 645
                      ************************************************************

consensus_4629#0      -GAAATCTCGAAA-GGTGCTGCGGC--ACAACACCCTGATTCAGGAGATTCTTTCCCAAT 834
consensus_4629#1      TGAAATCTCGNAAAGGTGCTGCGGGGAACAANACCCTGGAT------------------- 686
                       ********* ** **********   **** ******  *                   

consensus_4629#0      CGAAAGTGAGTTTC 848
consensus_4629#1      --------------