These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCGGACGCGTGGGCGGTTGCGGAAATTATTAAAGATCTGGACCTGCCAGCCTGTCAGGATAATAATGAATTCTACGTCAAGGAGGCACGCGACATGGTGACGATCGTGAAACATCTCATCTCACTAGGACACAAATTTGAAGCAAACGAAATCATAAACCTTAATCTGGAGCCGGGCATATGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGTGCACGTGGACTGCCGTGGCAGAGCAGCGATCAGGACATTGCCAAGTTCTTCCGTGGACTGAATGTGGCCAAGGGTGGTGTAGCTCTTTGTTTATCACCGCAAGGACGCCGCAACGGCGAAGCATTGGTACGGTTCGTGTCACAGGAACATCGCGATATGGCGCTCAAGCGGCACAAGCATCACATTGGCAATCGGTACATCGAGGTGTATCGAGCCAACGGGGAGGACTTCCTGGCCGTGGCCGGTGGTGCATCCAACGAAGCGCAAGCCTTCCTGTCGAAGGGCGCACAGGTAATCATCCGGATGCGGGGATTACCCTACGATTGCACTGCCAAGCAGGTGCTTGATTTCTTTCGCCAACGGTGAGAACAGTTGCAACGTGCTGGACCGGTGCCGATGGCATCCTTTTTGTGAAGAAACCGGACGGTCGAGCGACCGGGGATGCGTT] [+] EMBL BM611290 [CCGCGGACGCGTGGGCGGTTGCGGAAATTATTAAAGATCTGGACCTGCCAGCCTGTCAGGATAATAATGAATTCTACGTCAAGGAGGCACGCGACATGGTGACGATCGTGAAACATCTCATCTCACTAGGACACAAATTTGAAGCAAACGAAATCATAAACCTTAATCTGGAGCCGGGCATATGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGTGCACGTGGACTGCCGTGGCAGAGCAGCGATCAGGACATTGCCAAGTTCTTCCGTGGACTGAATGTGGCCAAGGGTGGTGTAGCTCTTTGTTTATCACCGCAAGGACGCCGCAACGGCGAAGCATTGGTACGGTTCGTGTCACAGGAACATCGCGATATGGCGCTCAAGCGGCACAAGCATCACATTGGCAATCGGTACATCGAGGTGTATCGAGCCAACGGGGAGGACTTCCTGGCCGTGGCCGGTGGTGCATCCAACGAAGCGCAAGCCTTCCTGTCGAAGGGCGCACAGGTAATCATCCGGATGCGGGGATTACCCTACGATTGCACTGCCAAGCAGGTGCTTGATTTCTTTCGCCAACGGTGAGAACAGTTGCAACGTGCTGGACCGGTGCCGATGGCATCCTTTTTGTGAAGAAACCGGACGGTCGAGCGACCGGGGATGCGTT] consensusID : consensus_4637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCGGACGCGTGGGCGACCGAGCATAAGGAGCGCGCGCGTGTGGCCACAGTGTGTGTGTTTTTTTTTGCCGCGATCCGCATGTTGTCGGTGCAAAACGTTTTGTGCTTGATCCTTCGTAACGGTTCAGCCGCGAACGTATCCTGCCGTAGTGTTGTGACTTGAACCTAGGTTCTAATCTGCTATAAATAGAGTGTACAAAAGAGTGTGCCTGTGTTGGTGTGGTCTACCGGCGGCCTGATAAGAGATTAAACCCTCCCGACAGCAATCAATCGCTGTGTGCTGTGTTCTGGTGTTTGTTAGTGTGACTTGGGGTCTTAAAAAAATGTGCTAGAAGTTTGAAAATACGGGTCGACTCTGCAACATACAAAGAAGGGGAAAATCAATTACACCTGCGTGTGCTACTGCTGCTCCTATCGAACTGGAACGGGATTACGCGGGCATCGATAGGGGATGCGATTGCACCAACACACTGGCAGCGAATCACCCTGTATTAGCCATCTTTATTGGCTGTAAAGCTTGGTGCGCTGTGCCGTGTTTGTGATAAGCAGAACCCCCTGGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGCGCACGTGGACTGCCGTGGCAGAGC] [+] EMBL BM594132 [CCGCGGACGCGTGGGCGACCGAGCATAAGGAGCGCGCGCGTGTGGCCACAGTGTGTGTGTTTTTTTTTGCCGCGATCCGCATGTTGTCGGTGCAAAACGTTTTGTGCTTGATCCTTCGTAACGGTTCAGCCGCGAACGTATCCTGCCGTAGTGTTGTGACTTGAACCTAGGTTCTAATCTGCTATAAATAGAGTGTACAAAAGAGTGTGCCTGTGTTGGTGTGGTCTACCGGCGGCCTGATAAGAGATTAAACCCTCCCGACAGCAATCAATCGCTGTGTGCTGTGTTCTGGTGTTTGTTAGTGTGACTTGGGGTCTTAAAAAAATGTGCTAGAAGTTTGAAAATACGGGTCGACTCTGCAACATACAAAGAAGGGGAAAATCAATTACACCTGCGTGTGCTACTGCTGCTCCTATCGAACTGGAACGGGATTACGCGGGCATCGATAGGGGATGCGATTGCACCAACACACTGGCAGCGAATCACCCTGTATTAGCCATCTTTATTGGCTGTAAAGCTTGGTGCGCTGTGCCGTGTTTGTGATAAGCAGAACCCCCTGGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGCGCACGTGGACTGCCGTGGCAGAGC] consensusID : consensus_4637#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CCGCGGCAAAAGCTCCAGTCGATGCCGAGTCTGCCGCCAACGCCGGCCTCGGTTGCGGAAATTATTAAAGATCTGGACCTGCCAGCCTGTCAGGATAACAATGAATTCTATGTCAAGGAGGCACGCGACATGGTGACGATCGTGAAACATCTCATCTCACTAGGACACAAATTTGAAGCAAACGAAATCATAAACCTTAATCTGGAGCCGGGCATATGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGCGCACGTGGACTGCCGTGGCAGAGCAGCGATCAGGACATTGCCAAGTTCTTCCGTGGACTGAATGTGGCCAAGGGTGGTGCTGCTGCTGCTGCTGCCCTGTCGTCCTCGGTGACGGGTGCCGCCAGTGCCGGTGGGCTGGCTGCCTTCGGGCACAGTCCTGCCACCGCGGCAGGGTTAGCAGCGGCCGGGCTGGGCGCTACTTCGGCAGCGTCCGGTGCCGCGGAGCCTGGCCGGCGGTTTGCCGCCCCATCTGGCCGCCGCTCATCCGGGCGCCCAGTACGCACCGCTCTACTTTATGCACCGCCACGCCGCCATGCTCG] [+] EMBL BM588680 [CCGCGGCAAAAGCTCCAGTCGATGCCGAGTCTGCCGCCAACGCCGGCCTCGGTTGCGGAAATTATTAAAGATCTGGACCTGCCAGCCTGTCAGGATAACAATGAATTCTATGTCAAGGAGGCACGCGACATGGTGACGATCGTGAAACATCTCATCTCACTAGGACACAAATTTGAAGCAAACGAAATCATAAACCTTAATCTGGAGCCGGGCATATGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGCGCACGTGGACTGCCGTGGCAGAGCAGCGATCAGGACATTGCCAAGTTCTTCCGTGGACTGAATGTGGCCAAGGGTGGTGCTGCTGCTGCTGCTGCCCTGTCGTCCTCGGTGACGGGTGCCGCCAGTGCCGGTGGGCTGGCTGCCTTCGGGCACAGTCCTGCCACCGCGGCAGGGTTAGCAGCGGCCGGGCTGGGCGCTACTTCGGCAGCGTCCGGTGCCGCGGAGCCTGGCCGGCGGTTTGCCGCCCCATCTGGCCGCCGCTCATCCGGGCGCCCAGTACGCACCGCTCTACTTTATGCACCGCCACGCCGCCATGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4637#0 ---------------------------------CCGCGGACGCGTGGG-CGGTTGCGGAA 26 consensus_4637#2 CCGCGGCAAAAGCTCCAGTCGATGCCGAGTCTGCCGCCAACGCCGGCCTCGGTTGCGGAA 60 consensus_4637#1 ----------------------------------------------CCGCGGACGCGTGG 14 *** *** consensus_4637#0 ATTATTAAAGATCTGGACCTGCCAGCCTGTCAGGATAATA-ATGAATTCTACGTCAAGGA 85 consensus_4637#2 ATTATTAAAGATCTGGACCTGCCAGCCTGTCAGGATAACA-ATGAATTCTATGTCAAGGA 119 consensus_4637#1 GCGACCGAGCATAAGGAGC-GCGCGCGTGTGGCCACAGTGTGTGTGTTTTTTTTTGCCGC 73 * * ** *** * ** ** *** * * ** ** * * * consensus_4637#0 GGCACGCGACATGGTGACGATCGTGAAACATCTCAT-CTCACTAGGACACAAATTTGAAG 144 consensus_4637#2 GGCACGCGACATGGTGACGATCGTGAAACATCTCAT-CTCACTAGGACACAAATTTGAAG 178 consensus_4637#1 GATCCGC---ATGTTGTCGGT-GCAAAACGTTTTGTGCTTGATCCTTCGTAACGGTTCAG 129 * *** *** ** ** * * **** * * * ** * * ** * ** consensus_4637#0 CAAACGAAATCATAAACCTTAATCTGGAGCC--GGGCATATGCTCGATTGATGACGAAAT 202 consensus_4637#2 CAAACGAAATCATAAACCTTAATCTGGAGCC--GGGCATATGCTCGATTGATGACGAAAT 236 consensus_4637#1 CCGCGAACGTATCCTGCCGTAGTGTTGTGACTTGAACCTAGGTTCTAATC----TGCTAT 185 * * * ** ** * * * * * * * ** * ** * * * ** consensus_4637#0 CGATGGAACGTGTATAGTGCGTGCACGTGGACTGCCGTGGCAGAGCAGCGATCAGGACAT 262 consensus_4637#2 CGATGGAACGTGTATAGTGCGCGCACGTGGACTGCCGTGGCAGAGCAGCGATCAGGACAT 296 consensus_4637#1 AAATAGAGTGTACAAAA-GAGTGTGCCTGTGTTGGTGTGGTCTACCGGCGGCCTGATAAG 244 ** ** ** * * * * * * ** ** **** * * *** * * * consensus_4637#0 TG-CCAAGTTCTTCCGTGGACTGAATGTGGCCAAGGGTGGTGTAGCTCTTTGTTTATCAC 321 consensus_4637#2 TG-CCAAGTTCTTCCGTGGACTGAATGTGGCCAAGGGTGGTGCTGCTG-----CTGCTGC 350 consensus_4637#1 AGATTAAACCCTCCCGACAGCAATCAATCGCTGTGTGCTGTGTTCTGGT--GTTTGTTAG 302 * ** ** *** * * ** * * *** * consensus_4637#0 CGCAAGGACGCCGCAACGGCGAAGCATTGGTACGGTTCGTGTCACAGGAACATC-GCGAT 380 consensus_4637#2 TGCCCTGTCGTCCT--CGGTGACG----GGTGCCGCCAGTGCCGGTGGGCTGGCTGCCTT 404 consensus_4637#1 TGTGAC-TTGGGGTCTTAAAAAAATGTGCTAGAAGTTTGAAAATACGGGTCGACTCTGCA 361 * * * * * ** * consensus_4637#0 ATG-GCGCTCAAGCGGCACAAGCATCACATTGGCAATCGGTACATCGAGGTGTATCGAGC 439 consensus_4637#2 CGG-GCACAGTCCTGCCACCGCGGCAGGGTTAGCAGCGGCCGGGCTGGGCGCTACTTCGG 463 consensus_4637#1 ACATACAAAGAAGGGGAAAATCAATTACACCTGCGTGTGCTACTGCTGCTCCTATCGAAC 421 * * * ** * ** consensus_4637#0 CAACGGGGAGGACTTCCTGGCCGTGGCCGGTGGTGCA-TCCAACGAAGCGCAAGCCTTCC 498 consensus_4637#2 CAGCGTCCGGTGCCGCGGAGCC-TGGCCGGCGGTTTG-CCGCCCCATCTGGCCGCCGCTC 521 consensus_4637#1 TGGAACGGGATTACGCG-GGCATCGATAGGGGATGCGATTGCACCAACACACTGGCAGCG 480 * ** * ** * * * * * * consensus_4637#0 TGTCGAAGGGCGCACAGGTAATCATCCGGATGCGGGGATTACCCTACGATTGCACTGCCA 558 consensus_4637#2 ATCCG---GGCGCCCAG-TACGCACCGCTCTAC-----TTTATGCACCGCCACGCCGCCA 572 consensus_4637#1 AATCACCCTGTATTAGCCATCTTTATTGGCTGTAAAGCTTGGTGCGCTGTGCCGTGTTTG 540 * * * ** * * consensus_4637#0 AGCAGGTGCTTGATTTCTTTCGCCAACGGTGA--GAACAGTTGCAACGTGCTGGACCGGT 616 consensus_4637#2 TGCTCG------------------------------------------------------ 578 consensus_4637#1 TGATAAGCAGAACCCCCTGGCTCGATTGATGACGAAATCGATGGAACGTGTATAGTGCGC 600 * consensus_4637#0 GCCGATGGCATCCTTTTTGTGAAGAAACCGGACGGTCGAGCGACCGGGGATGCGTT 672 consensus_4637#2 -------------------------------------------------------- consensus_4637#1 GCACGTGGACTGCCGTGGCAGAGC-------------------------------- 624 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||