These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence [CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGCTTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGACGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCCGTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCGGTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCGCGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG] [+] EMBL BM592329 [CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGCTTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGACGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCCGTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCGGTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCGCGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG] [+] EMBL BM593004 [ ccgAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGCTTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGACGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCCGTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCGGTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGC AGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCGCGCTGCTCGAACCGGCCAGGGga ] consensusID : consensus_4647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CCGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGCGGAACAGCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGGGGCAAACCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTTCGGACAG] [+] EMBL BM588615 [CCGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGCGGAACAGCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGGGGCAAACCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTTCGGACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4647#0 CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGC 60 consensus_4647#1 ------------------------------------------------------------ consensus_4647#0 TTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGA 120 consensus_4647#1 ------------------------------------------------------------ consensus_4647#0 CGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCC 180 consensus_4647#1 ------------------------------------------------------------ consensus_4647#0 GTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCG 240 consensus_4647#1 ------------------------------------------------------------ consensus_4647#0 GTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGA 300 consensus_4647#1 ---------------------------------CCGCTACTGGAACACGGTCGGCTCGGA 27 ************************* consensus_4647#0 GGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCG 360 consensus_4647#1 GGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCG 87 ************************************************************ consensus_4647#0 GCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCC 420 consensus_4647#1 GCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCC 147 ************************************************************ consensus_4647#0 ACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACA 480 consensus_4647#1 ACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCA-GTGCGGCCGGCCGGTCCAACA 206 ************************************** ********************* consensus_4647#0 AACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCG 540 consensus_4647#1 AACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGG----------------- 249 ******************************************* consensus_4647#0 CGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGC 600 consensus_4647#1 ---------------CCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGC 294 ********************************************* consensus_4647#0 GGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG- 659 consensus_4647#1 GGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGC 354 *********************************************************** consensus_4647#0 ------------------------------------------------------------ consensus_4647#1 GGAACAGCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGG 414 consensus_4647#0 ------------------------------------------------------------ consensus_4647#1 GGCAAACCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTT 474 consensus_4647#0 ------- consensus_4647#1 CGGACAG 481 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||