cluster # 4648

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Anopheles gambiae
cluster # 4648 cluster # 4648 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4648#0 length = 783 sequences # 2

consensus_4648#1 length = 672 sequences # 1

consensusID : consensus_4648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 783
fasta sequence

                              [CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCATTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCACGCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCGATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACCTAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATTACGGAAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTGAAGGTTACGAGCATCAGCCCGGGCATCGTGCGGACGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTGGAGGCGGACGATGTTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAGGTGCACGAGGTTATCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCTCTTTTCATCAACAATC]

[+] EMBL BM651687             [CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCATTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCACGCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCGATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACCTAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATTACGGAAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGG                                                                                                                                                                                                                           ]
[+] EMBL BX621232             [                                 CGATCGTAACCGGTGCAAGCTCGGGCATTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACCTAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATAACGGAAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTGAAGGTTACGAGCATCAGCCCGGGCATCGTGCGGACGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTGGAGGCGGACGATGTTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAGGTGCACGAGGTTATCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCTCTTTTCATCAACAATC]




>consensus_4648#0
CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCA
TTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCAC
GCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAA
TACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGA
TCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGA
CCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACG
TGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCG
ATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACC
TAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATTACGGAAACGTTGCGCAATG
ACCTGCGCAACGAAGGTACGCGGGTGAAGGTTACGAGCATCAGCCCGGGCATCGTGCGGA
CGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTGGAGGCGGACGATG
TTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAGGTGCACGAGGTTA
TCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCTCTTTTCATCAACA
ATC

consensusID : consensus_4648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [AGGCCAGAATCGGCACGATTGCCGGTGCAGCTCGGGCATTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGCATGGCCATATCGTGAACATTAACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAACCTAAAGCATACTACGGGTGCATCCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAGGACCCGGGGCAATCCGATGCGGNACGGGAAAGAATAGGTCCCCGGGANGGGTTGACCCAAGTTGATCAACGATTACGGCCCAATGGCTTGGAGA]

[+] EMBL BX467145             [AGGCCAGAATCGGCACGATTGCCGGTGCAGCTCGGGCATTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGCATGGCCATATCGTGAACATTAACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAACCTAAAGCATACTACGGGTGCATCCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAGGACCCGGGGCAATCCGATGCGGNACGGGAAAGAATAGGTCCCCGGGANGGGTTGACCCAAGTTGATCAACGATTACGGCCCAATGGCTTGGAGA]




>consensus_4648#1
AGGCCAGAATCGGCACGATTGCCGGTGCAGCTCGGGCATTGGTGCAACGGCAGTGAAAGC
TCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGA
GCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGT
GACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGT
GGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGG
CAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAG
TCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGCATGGCCATATCGTGAACATTA
ACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAACCTAAAGCATACTACGGGTGCAT
CCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTGCGCAATGACCTGCGCAACGAAG
GTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAGGACCCGGGGCAATCCGATGCGG
NACGGGAAAGAATAGGTCCCCGGGANGGGTTGACCCAAGTTGATCAACGATTACGGCCCA
ATGGCTTGGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4648#0      CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCA 60
consensus_4648#1      ------------------AGGCCAGAATCGGCACGATTG---CCGGTGCA-GCTCGGGCA 38
                                         *  * ***  *   **** *   ******** **** ****

consensus_4648#0      TTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCAC 120
consensus_4648#1      TTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCAC 98
                      ********** ** ******** ** ***************** ****************

consensus_4648#0      GCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAA 180
consensus_4648#1      GCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAA 158
                      ********** ********************** ****************** *******

consensus_4648#0      TACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGA 240
consensus_4648#1      TACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGA 218
                      ************************************************************

consensus_4648#0      TCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGA 300
consensus_4648#1      TCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGA 278
                      ************************************************************

consensus_4648#0      CCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACG 360
consensus_4648#1      CCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACG 338
                      ************************************************************

consensus_4648#0      TGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCG 420
consensus_4648#1      TGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCG 398
                      ************************************************* **********

consensus_4648#0      -ATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAAC 479
consensus_4648#1      CATGGCCATATCGTGAACATTAACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAAC 458
                       ********************************** ************************

consensus_4648#0      CTAAA-CAT-CTACGG-TGCATCCAAGTAT-GCCGTTA-CCGCGATTACGGA-AACGTTG 533
consensus_4648#1      CTAAAGCATACTACGGGTGCATCCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTG 518
                      ***** *** ****** ************* ******* ******* ***** *******

consensus_4648#0      CGCAATGACCTGCGCAACGAAGGTACGCGGGT----GAAGGTT--ACGAGCATCAGCCCG 587
consensus_4648#1      CGCAATGACCTGCGCAACGAAGGTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAG 578
                      ********************************       ****  **      **  * *

consensus_4648#0      GGCATCGTGCGGACGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTG 647
consensus_4648#1      GACCCGGGGCAATCCGATGCGGNACGGGAAA--GAATAGGTCCCCGGGANGGGTTGACCC 636
                      * *   * **   * **   **  * ***    **  ** * *  *  * *      *  

consensus_4648#0      GAGGCGGACGATGTTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAG 707
consensus_4648#1      AAGTTGATCAACGATTACGGCCCAATGGCTTGGAGA------------------------ 672
                       **  *  * * * *  ***  * **    *                             

consensus_4648#0      GTGCACGAGGTTATCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCT 767
consensus_4648#1      ------------------------------------------------------------
                                                                                  

consensus_4648#0      CTTTTCATCAACAATC 783
consensus_4648#1      ----------------