These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTCAGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTGGTCAGTGTGTGGAGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCCCGTGCGTGACGACGACGACGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCAGCCAAATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTCGGGTGAGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAAAGCAAAAAAAGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCC] [+] EMBL BM623866 [CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTCAGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTGGTCAGTGTGTGGAGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCCCGTGCGTGACGACGACGACGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCAGCCAAATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTCGGGTGAGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAAAGCAAAAAAAGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCC] consensusID : consensus_465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGGCTGCCGTCGATGGGCTTTCTGCTACGGGTGCTCGCACACACACACACACACGCGCAGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCCGAAGCAGCAGTAGCAGCGACAGACCAGAACAGCGGACGAGTGTATGTGTGTGTGTGTGTGATAAAAGATAGAAAAAGCGCGTAAGGGCGCACATCGTGCAAGTGCAAGAAACCCGTGTATTTGCGCGTGTGAAAGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACACATACTCACGGAGAGGGACGGAACTTTGCCTCAGCTATCAGTATTTCGATACGGGTCCGCCTTCTATCGGGAGGTCCGGATTTGCGTCCACACAGCAGCACAGC] [+] EMBL BM656984 [CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTCTGTGCACCAGAGATAGAAGTGGCTGCCGTCGATGGGCTTTCTGCTACGGGTGCTCGCACACACACACACACACGCGCAGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACGTCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGCGGCGATTCGGACGAAACATCCCTCCCACCGTGTGCCGAAGCAGCAGTAGCAGCGACAGACCAGAACAGCGGACGAGTGTATGTGTGTGTGTGTGTGATAAAAGATAGAAAAAGCGCGTAAGGGCGCACATCGTGCAAGTGCAAGAAACCCGTGTATTTGCGCGTGTGAAAGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACACATACTCACGGAGAGGGACGGAACTTTGCCTCAGCTATCAGTATTTCGATACGGGTCCGCCTTCTATCGGGAGGTCCGGATTTGCGTCCACACAGCAGCACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_465#0 CCGCCCACGCGTCCGCTGTGTCTCTGCTGGCAGCGAACGCACTGGGTGTCCCCATCCGTC 60 consensus_465#1 --------------------CCGGCACAACCCAAGAAAGCAACGGTGCTGCCCATT--TT 38 * * * *** *** ** * ***** * consensus_465#0 AGACGGCCATTGAAATTTTCCTTCGCTGGTGCGCGCTGCTGTCGTGTG-GTCAGTGTGTG 119 consensus_465#1 GCTTCAACTCTAAATTGTGCGTTTGTGTCTGTGTGTGTGTGTC-TGTGCACCAGAGATAG 97 * * ** * * * ** * ** * * **** **** *** * * consensus_465#0 GAGTCTCCGAAACAGAGTGTGTGCGTGTTTTTTTTCCCTTCTTCTGCCC---CGTGCGTG 176 consensus_465#1 AAGTGGCTGCCGTCGATGGGCTTTCTGCTACGGGTGCTCGCACACACACACACACACGCG 157 *** * * ** * * ** * * * * * * * ** * consensus_465#0 ACGACGACGA-CGACGGTGCGTTGCGGTACTGTGCTGGGCCGGGCGTGGAAGAGGTATCA 235 consensus_465#1 CAGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAG-CAACGGTGGGGTGCAA 216 ** ** * * * * *** * * * ** ** * * * * *** * consensus_465#0 GCCAAATCGGCCAGGAAAAGAAAACAGACGCAACACACGCACGCACACATACGCGGTCTC 295 consensus_465#1 CGTCCATCCATCAGCAGCAGCAG-CAGCAGCAGCAAGATTATCCCCGGGAACG-GGCGGC 274 *** *** * ** * *** *** ** * * * *** ** * consensus_465#0 GGGTGAGCCTGATTTGGGATAATTGAATCCACCTCCAGGGCGGACAGAGTCTCCAA-AGC 354 consensus_465#1 AGGCGG---CGATTCGGACGAAAC--ATCC-CTCCCACCGTGTGCCGAAGCAGCAGTAGC 328 ** * **** ** ** **** * *** * * * ** * ** *** consensus_465#0 AAAAAAAGGGCAGCACAACCCAAGAAAGCAACGGTGCTGCCCATTTTGCTTCAACTCTAA 414 consensus_465#1 AGCGACAGACCAGAACAGCGGACGAGTGTATGTGTG-TGTGTGTGTGATAAAAGATAGAA 387 * * ** *** *** * * ** * * *** ** * * * * ** consensus_465#0 ATTGTGCGTTTGTGT-----CTGTGTGTGTGTG-----TCTGTGCACCAGAG-ATAGAAG 463 consensus_465#1 AAAGCGCGTAAGGGCGCACATCGTGCAAGTGCAAGAAACCCGTGTATTTGCGCGTGTGAA 447 * * **** * * *** *** * *** * * * * * consensus_465#0 TGATAACAATCAGTCGGGTCGTGCCGATCCACACCGGACCAGCAACGGTGGGGTGCAACG 523 consensus_465#1 AGAGAGAAAGAGAGAGAAAGAGAGAGGCCCACAC-ATACTCACGGAGAGGGACGGAACTT 506 ** * ** * * ****** ** * * ** * * consensus_465#0 TCCATCCATCAGCAGCAGCAGCAGCAGCAGCAAGATTATCCCCGGGAACGGGCGGCAGGC 583 consensus_465#1 TGCCTCAGCTATCAGTA-TTTCGATACGGGTCCGCCTTCTATCGGGAGGTCCGGATTTGC 565 * * ** * *** * * * * * * ***** * ** consensus_465#0 GGCGATTCGGACGAAACATCCCTCCCACCGTGTGCC 619 consensus_465#1 GTCCACACAG-CAGCACAGC---------------- 584 * * * * * * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||