cluster # 4654

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Anopheles gambiae
cluster # 4654 cluster # 4654 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4654#0 length = 710 sequences # 2

consensus_4654#1 length = 631 sequences # 1

consensusID : consensus_4654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence

                              [CCGGACCGACCGGGTGCGCATACGTGTAGAAACGACGCTTCCCTCGACCGAATTTCCGTACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCGGTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAGATAAAAAAGGAGCAAATTGCTCCGTGC]

[+] EMBL BM654612             [CCGGACCGACCGGGTGCGCATACGTGTAGAAACGACGCTTCCCTCGACCGAATTTCCGTACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCGGTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGAT                                                                                   ]
[+] EMBL BM655221             [         ccgcccaCGCGTCCG GTAGAAACGACGCTTCCCTCGACCGAATTTCCGTACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCGGTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAGATAAAAAAGGAGCAAATTGCTCCGTGC]




>consensus_4654#0
CCGGACCGACCGGGTGCGCATACGTGTAGAAACGACGCTTCCCTCGACCGAATTTCCGTA
CCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAAAGCAAAACGATCG
AAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAATTGTGAA
TATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGCCACAGACG
CAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTTGCAAGCGT
GTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTGTTTTTTTA
TGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAACGCAAATCG
GTTTTGTGTGTTGGAGCTGAAATAATCTCTTGCACAGAGTGTGTGTGTGTTTCCCGGCTT
ATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTGCCAGTTGGCTGTGTTATCAAAG
TTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGACGAGAACGAATATTCGAATCCG
AAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCA
GAATCCGCTCAAACGAAAATAAGATAAAAAAGGAGCAAATTGCTCCGTGC

consensusID : consensus_4654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCGCCTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACCTCATCCAAGTAGTCGACGACAAAGTGTGCCCGTGAGTGCATGTGGTGTCTGGCTCTGTCAATGTGTTGTTGTTGACAGTGTGTGTTTTTTTCTGCAATAAAGTTATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTTCGAGTCCAAGATTACCTTCGAAATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGGCAACAACTACACGCTGTTCTGGCAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCACTATCAGGGCACCGTCGCCAGCGGTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGGTGCGTCGGCCGCCACCGCAGCCGCAGCGGCC]

[+] EMBL BM592861             [CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCCCGGCTTATCCCCTGTGAAACCGAGCCTAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGCCCCGCGCCTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACCTCATCCAAGTAGTCGACGACAAAGTGTGCCCGTGAGTGCATGTGGTGTCTGGCTCTGTCAATGTGTTGTTGTTGACAGTGTGTGTTTTTTTCTGCAATAAAGTTATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTTCGAGTCCAAGATTACCTTCGAAATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGGCAACAACTACACGCTGTTCTGGCAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCACTATCAGGGCACCGTCGCCAGCGGTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGGTGCGTCGGCCGCCACCGCAGCCGCAGCGGCC]




>consensus_4654#1
CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCCCGGCTTATCCCCTGTGAAACCGAGCC
TAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAGTTGATCTGTGC
CCCGCGCCTTGCTGTTGACGAGAACGAATATTCGAATCCGAAGTTCGCACAGCAGAGATT
AAGCGATTTTTGGAGTGAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAAT
AAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACCTCATCCAAGTAGTCGACGACAA
AGTGTGCCCGTGAGTGCATGTGGTGTCTGGCTCTGTCAATGTGTTGTTGTTGACAGTGTG
TGTTTTTTTCTGCAATAAAGTTATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTT
CGAGTCCAAGATTACCTTCGAAATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGG
CAACAACTACACGCTGTTCTGGCAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCA
CTATCAGGGCACCGTCGCCAGCGGTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGG
TGCGTCGGCCGCCACCGCAGCCGCAGCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4654#0      CCGGACCGACCGGGTGCGCATACGTGTA-GAAACGACGCTTCCCTCGACCGAATTTCCGT 59
consensus_4654#1      ---------CCGCCCACGCGTCCGCCCACGCGTCCGTGCTTCC--CGGCTTATCCCCTGT 49
                               ***    *** * **   * *   *   ******  ** *  *    * **

consensus_4654#0      ---ACCGTTGCTCGCCCTCGCTAGGAAGAGAAAACGAACGTACGAAAAAAA---AGCAAA 113
consensus_4654#1      GAAACCGAGCCTAACAACAAACCGGTGTACCAGTTGGTTGTGTTATCAAAGTTGAGTAAG 109
                         ****   **  *        **   *  *   *   **   *  ***    ** ** 

consensus_4654#0      ACGATCGAAAATTGCCGTGCGATTTTAAACGTGAAACAAATAAAATAAAAAACGAAATAA 173
consensus_4654#1      TTGATCTGTGCCCCGCGCCTTGCTGTTGACGAGAA-CGAATAT--TCGAATCCGAAGTTC 166
                        ****         **      * *  *** *** * ****   *  **  **** *  

consensus_4654#0      TTGTGA-ATATATCAAATCAACAAAGCGCAAAAGTAAGTGTCACATTTAAACCCAACAGC 232
consensus_4654#1      GCACAGCAGAGATTAAGCGATTTTTGGAGTGAAACAATTGT-GCATCTGTGTTCAGAATC 225
                             * * ** **   *     *     **  ** ***  *** *     **  * *

consensus_4654#0      CACAGACGCAGAAAGCAGTAGTGCAGTGAAAAGGAGTCATTTAGCTAGATGAAATCCTTT 292
consensus_4654#1      CGCTCAAACGAAAA-------TAAAATAAAAAAGGAGCAAATTGCTCCGTGCGATTAACC 278
                      * *  *  *  ***       *  * * **** *   **  * ***   **  **     

consensus_4654#0      GCAAGCGTGTGAAATTCGATAACACTCACTTTACATACCCACACACACGCATTTGGTTTG 352
consensus_4654#1      TCATCCAAGTAG---TCGACGACA--------AAGTGTGCCCGTGAGTGCATGTGGTGTC 327
                       **  *  **     ****  ***        *  *   * *      **** **** * 

consensus_4654#0      TTTTTTTATGCTTCTTCTTGTGGCGGATTCGGTTTAAGTTGCCCTTTACGCCATTTAAAC 412
consensus_4654#1      TGGCTCTGT-CAATGTGTTGTTGTTGA--CAGTGTGTGTT--TTTTTCTGCAATAAAGTT 382
                      *   * * * *    * **** *  **  * ** *  ***    ***  ** **  *   

consensus_4654#0      GCAAATCGGTTTTGTGTGTTGGAGCTGA--AATAATCTCTTGCACAGAGTGTGTGTGTGT 470
consensus_4654#1      ATTGAGTGCGTTTGCGGATCGAAAATGATTGAAAACTTCGAGTCCAAGATTACCTTCGAA 442
                          *  *  **** *  * * *  ***   * **  **  *  **   *     *    

consensus_4654#0      TTCCCGGCTTATCCC----CTGTGAAACCGAGCC----TAACAACAAACCGGTGTGCCAG 522
consensus_4654#1      ATACCGACCAATCTCGACTTTGACAAGCTGATCCGGGGCAACAACTACACGCTGTTCTGG 502
                       * *** *  *** *     **  ** * ** **     ****** *  ** *** *  *

consensus_4654#0      TTGG--CTGTGTTATCAA-AGTTGAGTAAGTTGATCTGTGCCCCGCTCGTTGCTGTTGAC 579
consensus_4654#1      CAGAACCTGCACCAGCAGCAGCAGCAGCAGCAGCACCACTATCAGGGCACCGTCGCCAGC 562
                        *   ***    * **  **  *    **  *  *      * *  *   *  *    *

consensus_4654#0      GAGAACGAATATTCGAAT--CCGAAGTTCGCACAGCAGAGAT-TAAGCGATTTTTGGAGT 636
consensus_4654#1      G-GTGCGGCAGCCCGGCTGGCCGCCGTAGGTACGGCCGGTGCGTCGGCCGCCACCGCAGC 621
                      * *  **      **  *  ***  **  * ** ** *     *  **       * ** 

consensus_4654#0      -GAAACAATTGTGCATCTGTGTTCAGAATCCGCTCAAACGAAAATAAGATAAAAAAGGAG 695
consensus_4654#1      CGCAGCGGCC-------------------------------------------------- 631
                       * * *                                                      

consensus_4654#0      CAAATTGCTCCGTGC 710
consensus_4654#1      ---------------