cluster # 4655

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Anopheles gambiae
cluster # 4655 cluster # 4655 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4655#0 length = 683 sequences # 1

consensus_4655#1 length = 622 sequences # 1
consensus_4655#2 length = 446 sequences # 1

consensusID : consensus_4655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGAGCAATGAAAAAAAGTGATAGAGAGAGAGAGAGAGAGAGAGAAATGAAAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGAAGCTCTCGAACGATGCGCGCAAGTTTTCCGCCCTGGCCGCCAGCCGCAAAAACTCCAAGGACGCCGACCTGACGGCACTGGCCGGTGGCGCCAACGCAGCCCAATCGAGCCAGCATGCGGCGGGGCAGCATCATCACCATCATCACCA]

[+] EMBL BM594205             [CCGGAGCAATGAAAAAAAGTGATAGAGAGAGAGAGAGAGAGAGAGAAATGAAAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGAAGCTCTCGAACGATGCGCGCAAGTTTTCCGCCCTGGCCGCCAGCCGCAAAAACTCCAAGGACGCCGACCTGACGGCACTGGCCGGTGGCGCCAACGCAGCCCAATCGAGCCAGCATGCGGCGGGGCAGCATCATCACCATCATCACCA]




>consensus_4655#0
CCGGAGCAATGAAAAAAAGTGATAGAGAGAGAGAGAGAGAGAGAGAAATGAAAGAGAGTG
AGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGG
TCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCG
AACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGC
AACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAA
TTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACA
AGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGA
AGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATG
CCGGAACGTCCGCCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGAAGCTC
TCGAACGATGCGCGCAAGTTTTCCGCCCTGGCCGCCAGCCGCAAAAACTCCAAGGACGCC
GACCTGACGGCACTGGCCGGTGGCGCCAACGCAGCCCAATCGAGCCAGCATGCGGCGGGG
CAGCATCATCACCATCATCACCA

consensusID : consensus_4655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGAGAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGA]

[+] EMBL BM622645             [GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGAGAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGA]




>consensus_4655#1
GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAAT
ATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGA
GAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAG
TTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATT
TTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCC
CAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATG
CCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAG
GAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAAC
CTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGT
GCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCGGACGCGGTGCCCCGCACC
CGCAAGAAGTCCTTCACCCGGA

consensusID : consensus_4655#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [CAAGTATCGACTAAAAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAGCAAAACCGGCTTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGCTTGTACATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGAGAGAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGAGAGAAGGTGAGCGAGAAAGGCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCGGGATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAGTGGTTAAGTTAATGCTGTAGGAGGTAAG]

[+] EMBL BX624134             [CAAGTATCGACTAAAAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAGCAAAACCGGCTTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGCTTGTACATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGAGAGAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGAGAGAAGGTGAGCGAGAAAGGCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCGGGATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAGTGGTTAAGTTAATGCTGTAGGAGGTAAG]




>consensus_4655#2
CAAGTATCGACTAAAAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAGCAAA
ACCGGCTTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGC
TTGTACATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCAC
TATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGG
GAGAGAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGAGAGAAGGTGAGCGAGA
AAGGCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCGGG
ATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAGTG
GTTAAGTTAATGCTGTAGGAGGTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4655#0      ------------------------------------------------------------
consensus_4655#1      GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAAT 60
consensus_4655#2      ------------------------------------------------------------
                                                                                  

consensus_4655#0      ----------------------------CCGGAGCAATGAAAAAAAGTGATAGAGAGAGA 32
consensus_4655#1      ATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGA 120
consensus_4655#2      ----------------------------------------------CAAGTATCGACTAA 14
                                                                         *  **   *

consensus_4655#0      GAGAGAGAGAGAGAAATGAAAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAG 92
consensus_4655#1      GAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAG 180
consensus_4655#2      AAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAG--------CAAAACCGGC 66
                       * * * * * * ***    * * ***   * **   **  *           * **   

consensus_4655#0      TTTTGCCTGGTGAATTG-GGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCAT 151
consensus_4655#1      TTTTGCCTGGTGAATTG-GGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCAT 239
consensus_4655#2      TTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGCTTGTAC 126
                      **  *  ***  **    **    **      **  *   *    ***     *    * 

consensus_4655#0      TTT-TGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCG 210
consensus_4655#1      TTT-TGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCG 298
consensus_4655#2      ATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTT 186
                       ** *  ** * * *      *   *  * *   * *   *    ****   ** *    

consensus_4655#0      CCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGA 270
consensus_4655#1      CCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGA 358
consensus_4655#2      TTTAA-AATATTCCTTA-CCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGAGA 244
                         ** ** *  **  * *        *      **       *    ****  *   **

consensus_4655#0      TGCCTATCTGTAC-GCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCA 329
consensus_4655#1      TGCCTATCTGTAC-GCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCA 417
consensus_4655#2      GAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGA-----GAGAAGGTGAGCGAG 299
                         * *     *  *  * ***    *  *     ****      ** *** * ****  

consensus_4655#0      AAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCC 389
consensus_4655#1      AAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCC 477
consensus_4655#2      AAAG-GCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCG 358
                      ** * * *  * ** *  * *      *    * **    ** *  *   ****   ** 

consensus_4655#0      AACCT-CAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCA 448
consensus_4655#1      AACCT-CAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCA 536
consensus_4655#2      GGATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAG 418
                          * *** ***       *    *        ** * ***   *        *     

consensus_4655#0      CGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCCGGACGCGGTGCCCC 508
consensus_4655#1      CGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGC-GGACGCGGTGCCCC 595
consensus_4655#2      TGGTTAAGTTAATGCTGTAGGAGGTAAG-------------------------------- 446
                       ***   *  ** ** *     *                                     

consensus_4655#0      GCACCCGCAAGAAGTCCTTCACCCGGAAGCTCTCGAACGATGCGCGCAAGTTTTCCGCCC 568
consensus_4655#1      GCACCCGCAAGAAGTCCTTCACCCGGA--------------------------------- 622
consensus_4655#2      ------------------------------------------------------------
                                                                                  

consensus_4655#0      TGGCCGCCAGCCGCAAAAACTCCAAGGACGCCGACCTGACGGCACTGGCCGGTGGCGCCA 628
consensus_4655#1      ------------------------------------------------------------
consensus_4655#2      ------------------------------------------------------------
                                                                                  

consensus_4655#0      ACGCAGCCCAATCGAGCCAGCATGCGGCGGGGCAGCATCATCACCATCATCACCA 683
consensus_4655#1      -------------------------------------------------------
consensus_4655#2      -------------------------------------------------------