These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1241 fasta sequence [CCGAATCGAATCGTATCGAAAATGTTTCCACTTATCGCTCTGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTGGCCTACGGTCTCACCGGTAGCATTGCCGGCGCCGTCATGTACGATGGATTGACCAACGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGTGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTTGCCGGATGCCTCGCAAACGGTGGCCTTTACATCAAAATTGGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAAAGAGTACGTGGACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGGCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATTCGCCAGCTTTCAGTACGAGCCGATCGCAGCCGCCAGCCTGGCACAGGTGTTCCGTGCCGTTACGCAGTCGGGCGAACAGGTCGCGGTCAAGGTGCAGTATGCCGATTTGCGCCGACGGTTCGACGGCGATTTGCGCACGATACTGTTCCTGCAGCGGTTGGTCGCGCTCCTGCACAAGAACTACAATTTCGGCTGGATAGTTGAAGATCTGCAGGGAACGCTGCGAGAGGAGCTTGATTTTGTGCACGAAGCGAAAAACGCAGAGCGCTGCGCACGGGACCTAGCCCGGCTGGACTTTGTGTACGTGCCGAAAGTGTTCTGGACGCACACGAACGAACGCATCCTGACGACGGAATTTATCGACGGCTGTAAAGTGAGCGATCGCAAAGCGATCGCTGCAATGCAGCTCGATCTAGCCGAGATCGATCGGCAGCTGTTTACCGCTTTCGGGCAGCAAATCTTCTCCACCGGCTTTGTGCATGCCGATCCGCACCCGGGCAACGTGTTTGTGCGCAAAGATCCGGNCAATCCGANGCGCATGCAGCTCGTACTGCTCGATCACGGTCTGTACGAGCAGCTGGCGCCNGCAGTGCGCGAAAATCTTGNCCGCTTTTTGGGAAGCGATCGTGCTGCGTGATCACNC] [+] EMBL BM646676 [CCGAATCGAATCGTATCGAAAATGTTTCCACTTATCGCTCTGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTGGCCTACGGTCTCACCGGTAGCATTGCCGGCGCCGTCATGTACGATGGATTGACCAACGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGTGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTTGCCGGATGCCTCGCAAACGGTGGCCTTTACATCAAAATTGGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAAAGAGTACGTGGACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGGCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATTC ] [+] EMBL BX626618 [ ACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCA GCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATTCGCCAGCTTTCAGTACGAGCCGATCGCAGCCGCCAGCCTGGCACAGGTGTTCCGTGCCGTTACGCAGTCGGGCGAACAGGTCGCGGTCAAGGTGCAGTATGCCGATTTGCGCCGACGGTTCGACGGCGATTTGCGCACGATACTGTTCCTGCAGCGGTTGGTCGCGCTCCTGCACAAGAACTACAATTTCGGCTGGATAGTTGAAGATCTGCAGGGAACGCTGCGAGAGGAGCTTGATTTTGTGCACGAAGCGAAAAACGCAGAGCGCTGCGCACGGGACCTAGCCCGGCTGGACTTTGTGTACGTGCCGAAAGTGTTCTGGACGCACACGAACGAACGCATCCTGACGACGGAATTTATCGACGGCTGTAAAGTGAGCGATCGCAAAGCGATCGCTGCAATGCAGCTCGATCTAGCCGAGATCGATCGGCAGCTGTTTACCGCTTTCGGGCAGCAAATCTTCTCCACCGGCTTTGTGCATGCCGATCCGCACCCGGGCAACGTGTTTGTGCGCAAAGATCCGGNCAATCCGANGCGCATGCAGCTCGTACTGCTCGATCACGGTCTGTACGAGCAGCTGGCGCCNGCAGTGCGCGAAAATCTTGNCCGCTTTTTGGGAAGCGATCGTGCTGCGTGATCACNC] consensusID : consensus_4657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [CGACCCACGCGTCCGGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTAGCCTACGGTCTCACCGGTAGCATTGCCGGCACCGTCCTGTACGATGGAGTGGCCAATGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGCGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTCGCCGGATGCCTGGCAAACGGTGGCCTTTACATCAAAATTGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAGAAGAGTACGTTGAAACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGCCGGGCGAAGTGCGTGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTAT] [+] EMBL BM588592 [CGACCCACGCGTCCGGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTAGCCTACGGTCTCACCGGTAGCATTGCCGGCACCGTCCTGTACGATGGAGTGGCCAATGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGCGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTCGCCGGATGCCTGGCAAACGGTGGCCTTTACATCAAAATTGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAGAAGAGTACGTTGAAACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGCCGGGCGAAGTGCGTGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4657#0 CCGAATCGAATCGTATCGAAAATGTTTCCACTTAT-CGCTCTGTGAACAGTGTGTATTGG 59 consensus_4657#1 ---------------------------CGACCCACGCGTCCGGTGAACAGTGTGTATTGG 33 * ** * ** * ****************** consensus_4657#0 TGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCG 119 consensus_4657#1 TGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCG 93 ************************************************************ consensus_4657#0 ACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCG 179 consensus_4657#1 ACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCG 153 ************************************************************ consensus_4657#0 CAGCCTGGCCTACGGTCTCACCGGTAGCATTGCCGGCGCCGTCATGTACGATGGATTGAC 239 consensus_4657#1 CAGCCTAGCCTACGGTCTCACCGGTAGCATTGCCGGCACCGTCCTGTACGATGGAGTGGC 213 ****** ****************************** ***** *********** ** * consensus_4657#0 CAACGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCT 299 consensus_4657#1 CAATGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCT 273 *** ******************************************************** consensus_4657#0 GAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGTGTA 359 consensus_4657#1 GAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGCGTA 333 ******************************************************** *** consensus_4657#0 CGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTTGCCGGATGCCT 419 consensus_4657#1 CGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTCGCCGGATGCCT 393 ************************************************ *********** consensus_4657#0 CGCAAACGGTGGCCTTTACATCAAAATTGGGCCAGGGGGTAGCCGCCGTTAATCACATCA 479 consensus_4657#1 GGCAAACGGTGGCCTTTACATCAAAATTGG-CCAGGGGGTAGCCGCCGTTAATCACATCA 452 ***************************** ***************************** consensus_4657#0 TACCGA-AAGAGTACGTGGACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAG 538 consensus_4657#1 TACCGAGAAGAGTACGTTGAAACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAG 512 ****** ********** ** *************************************** consensus_4657#0 GCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATT 598 consensus_4657#1 -CCGGGCGAAGTGCGTGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTAT- 570 ************** ******************************************* consensus_4657#0 CGCCAGCTTTCAGTACGAGCCGATCGCAGCCGCCAGCCTGGCACAGGTGTTCCGTGCCGT 658 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 TACGCAGTCGGGCGAACAGGTCGCGGTCAAGGTGCAGTATGCCGATTTGCGCCGACGGTT 718 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 CGACGGCGATTTGCGCACGATACTGTTCCTGCAGCGGTTGGTCGCGCTCCTGCACAAGAA 778 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 CTACAATTTCGGCTGGATAGTTGAAGATCTGCAGGGAACGCTGCGAGAGGAGCTTGATTT 838 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 TGTGCACGAAGCGAAAAACGCAGAGCGCTGCGCACGGGACCTAGCCCGGCTGGACTTTGT 898 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 GTACGTGCCGAAAGTGTTCTGGACGCACACGAACGAACGCATCCTGACGACGGAATTTAT 958 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 CGACGGCTGTAAAGTGAGCGATCGCAAAGCGATCGCTGCAATGCAGCTCGATCTAGCCGA 1018 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 GATCGATCGGCAGCTGTTTACCGCTTTCGGGCAGCAAATCTTCTCCACCGGCTTTGTGCA 1078 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 TGCCGATCCGCACCCGGGCAACGTGTTTGTGCGCAAAGATCCGGNCAATCCGANGCGCAT 1138 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 GCAGCTCGTACTGCTCGATCACGGTCTGTACGAGCAGCTGGCGCCNGCAGTGCGCGAAAA 1198 consensus_4657#1 ------------------------------------------------------------ consensus_4657#0 TCTTGNCCGCTTTTTGGGAAGCGATCGTGCTGCGTGATCACNC 1241 consensus_4657#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||