These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 915 fasta sequence [TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGTGTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCACGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAATGTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGTAATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGAAGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTAAAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTCATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGGAAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTCCCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTAGAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTG---CGGGTGCATACTTTGCATTCAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGTGGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGGTTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAAACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAAACGGACTGAACTGGA] [+] EMBL BX613961 [TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGTGTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCACGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAATGTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGTAATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGAAGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTAAAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTCATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGGAAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTCCCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTAGAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTG CGGGTGCATACTTTGCATTCAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGTGGGGAGGG ] [+] EMBL BX611055 [ GAAGAAAAGACAGTAAAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTCATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGGAAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTCCCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTAGAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTGCAACGGGTGCATACTTTGCATTCAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAGGGAGAAGGGAGGAGGCATGGGTGGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGGTTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAAACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAAACGGACTGAACTGGA] consensusID : consensus_4659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTAAAACTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGCATTGACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGGAAAGAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGCCCCACC] [+] EMBL BX613962 [ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTAAAACTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGCATTGACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGGAAAGAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGCCCCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4659#0 TATGTACCGAGCAAAAATTGTCACCACAGTTACAATAACGACCCAAAAAGATGCTATTGT 60 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 GTGTTACCTGGATGTGTACGAATCTGGAATGCGATGCTGTTTGAGTACACGAGATCATCA 120 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 CGATAATAAAATTAAGCAGGTACCCGGCACTGGCATCCATCCAGAAGCGAATCATGTAAT 180 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 GTAGAGGAAACATACACTGTCTAACTCGCATCATCCGTGTATCAAGAGGGAAGTGTTGGT 240 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 AATGCAGCACAGAACTACCCCAGCGAGCTTGAATGATCTCAATCGTACATTGTCCTGAGA 300 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 AGTTCCGTTGCTTTATTTCACTACCAAAAAAGGGAACCACTTGATGAAGAAAAGACAGTA 360 consensus_4659#1 ---ACCGTGGCTCTATGACACTACCAAAAAAGGGAACCACTCGATGAAGAAAAGACAGTA 57 **** *** *** *********************** ****************** consensus_4659#0 AAACTGGATGGAAAGTACCATAAACCTCCGCATGTATGATCCTCTCAAACTAAAAATTTC 420 consensus_4659#1 AAACTGGAGGGAAAGTACCATAAACCTCCGCAGGGATGAACCTCGCAAACTAAAAAGCGC 117 ******** *********************** * **** **** *********** * consensus_4659#0 ATTGACCAGAAGCTTCAGTACCGGTAAACATACCGAGGGTTGGGAGTGCACAATAGACGG 480 consensus_4659#1 ATTGACCAGAAGCCTCAGTACCGGGAAACATACCGAGGGGGGGGAGGGCACAAAAGACGG 177 ************* ********** ************** ***** ****** ****** consensus_4659#0 AAAGAAATGTAATCGTTTGGAATGTTTCCATATCTCCCATCCACGATTCGTACCAAATTC 540 consensus_4659#1 AAAGAAAGGAAAGCGTTGGGAAAGGTGCCATAGCGCCCAGCCACGAAGCGGACCAAAAGC 237 ******* * ** **** **** * * ***** * **** ****** ** ****** * consensus_4659#0 CCCACCCGACCACGAGTAAAAATAGTATAAGCCTACCGCTAGTAAGCAGCTGTTAATTTA 600 consensus_4659#1 CCCACC------------------------------------------------------ 243 ****** consensus_4659#0 GAATTCTAGATTATGCATGTAAGCGATACTTCTTGCTATTGCGGGTGCATACTTTGCATT 660 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 CAGCCAGCCATCCAGCCAACATCCATTCACCGTCCCAAGGAGAAGGGAGGAAGCATGGGT 720 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 GGGGAGGGGCTGTAGTGTGTTAATTGTACAGACAGCATAAAAAAAGCAAAAAATAATGGG 780 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 TTTACATCGTGTGCTAAGGTAGTGTTAATGTGTACCGAGAATGAGTTAGTAAAGTAAGAA 840 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 ACGGTTCCATGCTTAGTGATGAGAGAACGGACCGATGATCGAACTCTTCTCTTCTCCAAA 900 consensus_4659#1 ------------------------------------------------------------ consensus_4659#0 ACGGACTGAACTGGA 915 consensus_4659#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||