These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCTTGCAAGGAAAAAAACAGGATAAACGAAATAAAGCCAATATTATGATGCATTCAGTATATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACACACACACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAGGGGCGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCACAGAAATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAAGGAATGGAATTGAGTGCACATGTTTCTCATCAAGCTAACCTTGTTGTCCAACTANAATA] [+] EMBL BX622340 [CCTTGCAAGGAAAAAAACAGGATAAACGAAATAAAGCCAATATTATGATGCATTCAGTATATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACACACACACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAGGGGCGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCACAGAAATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAAGGAATGGAATTGAGTGCACATGTTTCTCATCAAGCTAACCTTGTTGTCCAACTANAATA] consensusID : consensus_4661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGTTGTTTTTCGCGGCACTCGGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTAAGAGAGACGTAGAGCAAAGAAGTATGTATTACAAAAAGATACACACACACACACTAACACACGCATACGCAGAGAAAAAACAACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAGTAATAGCAAAGAAGTAGCATAAGAATAATAAGAAGAAAACACACACACACACACAACAAACCATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTTGGTAATACGGTGGTGTTGTGTGCACCCGTATCATTGCAGCAAGGCATTGTATCACCAGGGGTTGACTTTATACAAGCCATTACCATGCATTACNACAACGACAAAACGCANAC] [+] EMBL BX467274 [GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGTTGTTTTTCGCGGCACTCGGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTAAGAGAGACGTAGAGCAAAGAAGTATGTATTACAAAAAGATACACACACACACACTAACACACGCATACGCAGAGAAAAAACAACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAGTAATAGCAAAGAAGTAGCATAAGAATAATAAGAAGAAAACACACACACACACACAACAAACCATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTTGGTAATACGGTGGTGTTGTGTGCACCCGTATCATTGCAGCAAGGCATTGTATCACCAGGGGTTGACTTTATACAAGCCATTACCATGCATTACNACAACGACAAAACGCANAC] consensusID : consensus_4661#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [ACAAACAAGTAAATAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATTACACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAGCTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGGTG] [+] EMBL BM655957 [ACAAACAAGTAAATAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATTACACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAGCTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4661#0 CCTTGCAAGGAAAAAAACAGGATAA--ACGAAATAAAGCCAATATTATGATGCA-TTCAG 57 consensus_4661#2 ------------------------------------------------------------ consensus_4661#1 ----------------GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAG 44 consensus_4661#0 TATATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACAC 117 consensus_4661#2 ------------------------------------------------------------ consensus_4661#1 TGCACATGTTTCTCATACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGT 104 consensus_4661#0 ACACACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAG 177 consensus_4661#2 ------------------------------------------------------------ consensus_4661#1 GTGTGCG---CAATGCAATGGT------CCAATCG---AAATGTGCAAATTATATACCGA 152 consensus_4661#0 GGGCGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCAC 237 consensus_4661#2 ------------------------------------------------------------ consensus_4661#1 CATAGTCCATCCGGCGCCG--CTGTGCGTTTAAC--GTCACTGTGCACGGAAGTGCTA-- 206 consensus_4661#0 AGAAATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCAC 297 consensus_4661#2 ----------------------------------------ACAAACAAGTAAATAACCAC 20 consensus_4661#1 GGGCATAGCTAGTAGTAGTGCAACTTTA--CTGCGTAGTGTTGTTTTTCGCGGCA--CTC 262 * * * consensus_4661#0 AAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAG 357 consensus_4661#2 AAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAG 80 consensus_4661#1 GGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTAAGAGAGACGTAGAGCAAAGAAG 322 * * *** * *** * * * * * ** ** * * ****** ** consensus_4661#0 GGTGGGGTA--AACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATT 415 consensus_4661#2 GGTGGGGTA--AACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATT 138 consensus_4661#1 TATGTATTACAAAAAGATACACACACACACACTAACAC-ACGCATACGCAGAGAAAAAAC 381 ** ** ** * ** ** * * * * * * ** * consensus_4661#0 TACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATA 475 consensus_4661#2 TACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATA 198 consensus_4661#1 AACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAGTAATAGCAAAGAAGTAGCATA 441 ** * * * * ** * * * * * **** * * * *** consensus_4661#0 CACCCGATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAA 535 consensus_4661#2 CACCCGATACCC-----------------------------------------ACACAAA 217 consensus_4661#1 AGAATAATAAGAAGAAAAC-------------------ACACACACACACACAACA-AAC 481 *** *** ** consensus_4661#0 CACACATACACATGCTGGAGGAGGTTT---AATGAGAAAAGCTAAACAGATTTGAAATTT 592 consensus_4661#2 CACACATACACATGCTGGAGGAGGTTT---AATGAGAAAAGCTAAACAGATTTGAAATTT 274 consensus_4661#1 CATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTTG 541 ** ********** * * * * * **** * * * * ** ** consensus_4661#0 ATAAAAAAAAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAA- 651 consensus_4661#2 ATAAAAAAAAAT---TACACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAAACAAA 331 consensus_4661#1 GTAATACGGTGGTGTTGTGTGCACCCG--TATCATTGCAGCAAGGCATTGTATCACCA-- 597 *** * * * * * * *** * ** * * * * * ** consensus_4661#0 GGAATGGAATTGAGTGCACATGTTTCTCAT-CAAGCTAACCTTGTTGTCCAA-CTANAAT 709 consensus_4661#2 GGAATGGAATTGAGTGCACATGTTTCTCATACAAGCTAACCTTGTTGTCCAAACTAGAAT 391 consensus_4661#1 GGGGTTGACTTTA-TACAAGCCATTACCATGCA---TTACNACAACGACAAAACGCANAC 653 ** * ** ** * * ** ** *** ** * ** * * ** * * consensus_4661#0 A----------------------------------------------------------- 710 consensus_4661#2 ACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACC 451 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 ------------------------------------------------------------ consensus_4661#2 GACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGC 511 consensus_4661#1 ------------------------------------------------------------ consensus_4661#0 ------------------------------------- consensus_4661#2 ATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGGTG 548 consensus_4661#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||