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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CCGCCCACGCGTCCGGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGCAGACGAATTCAAAAGGAGGTGTCGCAGCCTTGGCCGGACGTGCCCAAGCAGACTGGAACGCTGGGAAACCTTACGCCGGCTGACCGACATGGCTCAGTGCAGGTCGTGAGTTCAACCAATGGGGAATTGAATGCAGATGATCCTACCGCCGGACATTCGAACACACCGATCACGCAGCAGCCTGAGGTGGAACTGGTTGACGAACCAAAATGTTGCTGTTTCTTTAACGAAAGAAGAAGA]
[+] EMBL BM602623 [CCGCCCACGCGTCCGGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGCAGACGAATTCAAAAGGAGGTGTCGCAGCCTTGGCCGGACGTGCCCAAGCAGACTGGAACGCTGGGAAACCTTACGCCGGCTGACCGACATGGCTCAGTGCAGGTCGTGAGTTCAACCAATGGGGAATTGAATGCAGATGATCCTACCGCCGGACATTCGAACACACCGATCACGCAGCAGCCTGAGGTGGAACTGGTTGACGAACCAAAATGTTGCTGTTTCTTTAACGAAAGAAGAAGA]
consensusID : consensus_4663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CCGGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGGTCGTGAGTTCAACCCAATGGGGGAATTGAATG]
[+] EMBL BM594192 [CCGGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGGTCGTGAGTTCAACCCAATGGGGGAATTGAATG]
consensusID : consensus_4663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCGGACAAACTGTCGTCCCCACTAGCGGAAGGAATACCGGAGGTTTACTACTTCGGGCCCTGCGGCAAATACAATGCACTAGTAATGGAATTGCTCGGCCCGTCGCTCGAAGATCTGTTCGACTTGTGCGGTCGGCGATTCTCACTGAAGACAGTACTGATGATAGCAATACAATTACTCCATAGGATCGAGTATGTGCATAGTCGTCATTTAATTTATAGAGATGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCTTAAAACGTTGTTATATAACTATAGTGGTATCATATTCAACACGCGCTTTATTGAT]
[+] EMBL BM620902 [CCGGACAAACTGTCGTCCCCACTAGCGGAAGGAATACCGGAGGTTTACTACTTCGGGCCCTGCGGCAAATACAATGCACTAGTAATGGAATTGCTCGGCCCGTCGCTCGAAGATCTGTTCGACTTGTGCGGTCGGCGATTCTCACTGAAGACAGTACTGATGATAGCAATACAATTACTCCATAGGATCGAGTATGTGCATAGTCGTCATTTAATTTATAGAGATGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCTTAAAACGTTGTTATATAACTATAGTGGTATCATATTCAACACGCGCTTTATTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4663#0 ------------------------------------------------------------
consensus_4663#1 CCGGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATA 60
consensus_4663#2 ------------------------------------------------------------
consensus_4663#0 ------------------------------------------------------------
consensus_4663#1 CATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATA 120
consensus_4663#2 ------------------------------------------------------------
consensus_4663#0 ------------------CCGCCCACGCGTCCGG-----------TCGATCAATACGCAT 31
consensus_4663#1 CCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCAT 180
consensus_4663#2 ------------------------------------------------------------
consensus_4663#0 ATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTAT 91
consensus_4663#1 ATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTAT 240
consensus_4663#2 -------CCGGACAAACT-GTCGTCCCCACTAGCGGAAGGAATACCGGAGGTTTAC-TAC 51
* **** * * *** * * * ** * ***** **
consensus_4663#0 TTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAA-AGCGGACACACTCAAAGAGCGATA 150
consensus_4663#1 TTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAA-AGCGGACACACTCAAAGAGCGATA 299
consensus_4663#2 TTC----GGGCCCTGCGGCAAATACAATGCACTAGTAATGGAATTGCTCGGCCCGTCGC- 106
*** * * * ** * *** * ** * *** *** *
consensus_4663#0 CCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCC 210
consensus_4663#1 CCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCC 359
consensus_4663#2 TCGAAGATCTGTTCGACTTGTGCGGTCGGCGATTCTCACTGAAGACAGTACTGATGATAG 166
* ** * ** * *** ** * ** ** * * * ** * **
consensus_4663#0 CGAGGAGTTCGCCAAATATCTGCGC-TACGTGCGGCGGC----TAGACTTCTTCGAGACG 265
consensus_4663#1 CGAGGAGTTCGCCAAATATCTGCGC-TACGTGCGGCGGC----TAGACTTCTTCGAGACG 414
consensus_4663#2 CAATACAATTACTCCATAGGATCGAGTATGTGCATAGTCGTCATTTAATTTATAGAGATG 226
* * * * *** ** ** **** * * * * ** * **** *
consensus_4663#0 CCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCA-AAGGTTACGT 324
consensus_4663#1 CCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCA-AAGGTTACGT 473
consensus_4663#2 TAAAACCAGAAAATTTTCTAATCGGTAG---AAATTCAAATAAACGTGATAAAATTATAC 283
* * * * * * * * * ** * ** * * ** ***
consensus_4663#0 CGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGT-CGGTTCGCTAC 383
consensus_4663#1 CGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGT-CGGTTCGCTAC 532
consensus_4663#2 ATATAATAG--ATTTTGGTCTCGCC--AAAGAGTATATTGACTTAGATACGAATAAACAC 339
* ** * * ** * * ** ***** ** * ** * ** * **
consensus_4663#0 AGACCG-GTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAG 442
consensus_4663#1 AGACCG-GTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAG 591
consensus_4663#2 ATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACG 399
* *** ** ** * * * * * *** * ** * *
consensus_4663#0 CAGACGAATTCAAAAGGAGGTGTCGCAGCCTTGGCCGGACGTGCCCAAGCAGACTGGAAC 502
consensus_4663#1 GTCGTGAGTTCAACCCAATGGG----GGAATTGAATG----------------------- 624
consensus_4663#2 CATATGGGTAAAGAACAATCC-----AGACGTGA-TGATCTAGAGGCACTAGGCCACATG 453
* * * * * ** *
consensus_4663#0 GCTGGGAAACCTTACGCCGGCTGACCGACATGGCTCAGTGCAGGTCGTGAGTTCAACCAA 562
consensus_4663#1 ------------------------------------------------------------
consensus_4663#2 TTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAA-GCGGACACACTCAA 512
consensus_4663#0 TGGGGAATTGAATGCAGATGATCCTACC--GCCGGACATTCGAACACACCGATCACGCAG 620
consensus_4663#1 ------------------------------------------------------------
consensus_4663#2 AGAGCGATACCAAAAAATTGGTGATACGAAGCTTAAAACGTTGTTATATAACTATAGTGG 572
consensus_4663#0 CAGCCTGAGGTGGAACTGGTTGACGAACCAAAATGTTGCTGTTTCTTTAACGAAAGAAGA 680
consensus_4663#1 ------------------------------------------------------------
consensus_4663#2 TATCATATTCAACACGCGCTTTATTGAT-------------------------------- 600
consensus_4663#0 AGA 683
consensus_4663#1 ---
consensus_4663#2 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||