These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGCCCACGCGTCCGGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGCAGACGAATTCAAAAGGAGGTGTCGCAGCCTTGGCCGGACGTGCCCAAGCAGACTGGAACGCTGGGAAACCTTACGCCGGCTGACCGACATGGCTCAGTGCAGGTCGTGAGTTCAACCAATGGGGAATTGAATGCAGATGATCCTACCGCCGGACATTCGAACACACCGATCACGCAGCAGCCTGAGGTGGAACTGGTTGACGAACCAAAATGTTGCTGTTTCTTTAACGAAAGAAGAAGA] [+] EMBL BM602623 [CCGCCCACGCGTCCGGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGCAGACGAATTCAAAAGGAGGTGTCGCAGCCTTGGCCGGACGTGCCCAAGCAGACTGGAACGCTGGGAAACCTTACGCCGGCTGACCGACATGGCTCAGTGCAGGTCGTGAGTTCAACCAATGGGGAATTGAATGCAGATGATCCTACCGCCGGACATTCGAACACACCGATCACGCAGCAGCCTGAGGTGGAACTGGTTGACGAACCAAAATGTTGCTGTTTCTTTAACGAAAGAAGAAGA] consensusID : consensus_4663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGGTCGTGAGTTCAACCCAATGGGGGAATTGAATG] [+] EMBL BM594192 [CCGGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCCCGAGGAGTTCGCCAAATATCTGCGCTACGTGCGGCGGCTAGACTTCTTCGAGACGCCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCAAAGGTTACGTCGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGTCGGTTCGCTACAGACCGGTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAGGTCGTGAGTTCAACCCAATGGGGGAATTGAATG] consensusID : consensus_4663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CCGGACAAACTGTCGTCCCCACTAGCGGAAGGAATACCGGAGGTTTACTACTTCGGGCCCTGCGGCAAATACAATGCACTAGTAATGGAATTGCTCGGCCCGTCGCTCGAAGATCTGTTCGACTTGTGCGGTCGGCGATTCTCACTGAAGACAGTACTGATGATAGCAATACAATTACTCCATAGGATCGAGTATGTGCATAGTCGTCATTTAATTTATAGAGATGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCTTAAAACGTTGTTATATAACTATAGTGGTATCATATTCAACACGCGCTTTATTGAT] [+] EMBL BM620902 [CCGGACAAACTGTCGTCCCCACTAGCGGAAGGAATACCGGAGGTTTACTACTTCGGGCCCTGCGGCAAATACAATGCACTAGTAATGGAATTGCTCGGCCCGTCGCTCGAAGATCTGTTCGACTTGTGCGGTCGGCGATTCTCACTGAAGACAGTACTGATGATAGCAATACAATTACTCCATAGGATCGAGTATGTGCATAGTCGTCATTTAATTTATAGAGATGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATACATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCATATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAAGCGGACACACTCAAAGAGCGATACCAAAAAATTGGTGATACGAAGCTTAAAACGTTGTTATATAACTATAGTGGTATCATATTCAACACGCGCTTTATTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4663#0 ------------------------------------------------------------ consensus_4663#1 CCGGTAAAACCAGAAAATTTTCTAATCGGTAGAAATTCAAATAAACGTGATAAAATTATA 60 consensus_4663#2 ------------------------------------------------------------ consensus_4663#0 ------------------------------------------------------------ consensus_4663#1 CATATAATAGATTTTGGTCTCGCCAAAGAGTATATTGACTTAGATACGAATAAACACATA 120 consensus_4663#2 ------------------------------------------------------------ consensus_4663#0 ------------------CCGCCCACGCGTCCGG-----------TCGATCAATACGCAT 31 consensus_4663#1 CCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACGCAT 180 consensus_4663#2 ------------------------------------------------------------ consensus_4663#0 ATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTAT 91 consensus_4663#1 ATGGGTAAAGAACAATCCAGACGTGATGATCTAGAGGCACTAGGCCACATGTTTATGTAT 240 consensus_4663#2 -------CCGGACAAACT-GTCGTCCCCACTAGCGGAAGGAATACCGGAGGTTTAC-TAC 51 * **** * * *** * * * ** * ***** ** consensus_4663#0 TTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAA-AGCGGACACACTCAAAGAGCGATA 150 consensus_4663#1 TTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAA-AGCGGACACACTCAAAGAGCGATA 299 consensus_4663#2 TTC----GGGCCCTGCGGCAAATACAATGCACTAGTAATGGAATTGCTCGGCCCGTCGC- 106 *** * * * ** * *** * ** * *** *** * consensus_4663#0 CCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCC 210 consensus_4663#1 CCAAAAAATTGGTGATACGAAGCGAGCGACACCGATCGATGTACTCTGCGATGGTCATCC 359 consensus_4663#2 TCGAAGATCTGTTCGACTTGTGCGGTCGGCGATTCTCACTGAAGACAGTACTGATGATAG 166 * ** * ** * *** ** * ** ** * * * ** * ** consensus_4663#0 CGAGGAGTTCGCCAAATATCTGCGC-TACGTGCGGCGGC----TAGACTTCTTCGAGACG 265 consensus_4663#1 CGAGGAGTTCGCCAAATATCTGCGC-TACGTGCGGCGGC----TAGACTTCTTCGAGACG 414 consensus_4663#2 CAATACAATTACTCCATAGGATCGAGTATGTGCATAGTCGTCATTTAATTTATAGAGATG 226 * * * * *** ** ** **** * * * * ** * **** * consensus_4663#0 CCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCA-AAGGTTACGT 324 consensus_4663#1 CCCGATTACGATCATCTGAGACGGCTGTTTCAGGATCTGTTCTACTTCA-AAGGTTACGT 473 consensus_4663#2 TAAAACCAGAAAATTTTCTAATCGGTAG---AAATTCAAATAAACGTGATAAAATTATAC 283 * * * * * * * * * ** * ** * * ** *** consensus_4663#0 CGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGT-CGGTTCGCTAC 383 consensus_4663#1 CGACGATGGTGAATTCGATTGGACCGGAAAGACGATGTCAACGCCCGT-CGGTTCGCTAC 532 consensus_4663#2 ATATAATAG--ATTTTGGTCTCGCC--AAAGAGTATATTGACTTAGATACGAATAAACAC 339 * ** * * ** * * ** ***** ** * ** * ** * ** consensus_4663#0 AGACCG-GTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAG 442 consensus_4663#1 AGACCG-GTCACGAAGTCGTGGTGTCGCCAAACCGAGAAAGACATACACCAGCAAACAAG 591 consensus_4663#2 ATACCATATCGAGAGCATAAATCGCTGACGGGTACGGCGCGGTATATGTCGATCAATACG 399 * *** ** ** * * * * * *** * ** * * consensus_4663#0 CAGACGAATTCAAAAGGAGGTGTCGCAGCCTTGGCCGGACGTGCCCAAGCAGACTGGAAC 502 consensus_4663#1 GTCGTGAGTTCAACCCAATGGG----GGAATTGAATG----------------------- 624 consensus_4663#2 CATATGGGTAAAGAACAATCC-----AGACGTGA-TGATCTAGAGGCACTAGGCCACATG 453 * * * * * ** * consensus_4663#0 GCTGGGAAACCTTACGCCGGCTGACCGACATGGCTCAGTGCAGGTCGTGAGTTCAACCAA 562 consensus_4663#1 ------------------------------------------------------------ consensus_4663#2 TTTATGTATTTCCTAAGAGGTTCACTGCCATGGCAAGGTCTTAAA-GCGGACACACTCAA 512 consensus_4663#0 TGGGGAATTGAATGCAGATGATCCTACC--GCCGGACATTCGAACACACCGATCACGCAG 620 consensus_4663#1 ------------------------------------------------------------ consensus_4663#2 AGAGCGATACCAAAAAATTGGTGATACGAAGCTTAAAACGTTGTTATATAACTATAGTGG 572 consensus_4663#0 CAGCCTGAGGTGGAACTGGTTGACGAACCAAAATGTTGCTGTTTCTTTAACGAAAGAAGA 680 consensus_4663#1 ------------------------------------------------------------ consensus_4663#2 TATCATATTCAACACGCGCTTTATTGAT-------------------------------- 600 consensus_4663#0 AGA 683 consensus_4663#1 --- consensus_4663#2 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||