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Anopheles gambiae
cluster # 4665 cluster # 4665       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4665#0 length = 942 sequences # 2  
consensus_4665#1 length = 613 sequences # 1  

consensusID : consensus_4665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 942
fasta sequence
                              [CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAG--GTGAGGG-GTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAAACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCACCTTCCAGCCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGCTGCCGCCGTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGAGTGGCGAAGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATTTGCCCTTCTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT]

[+] EMBL BM595462             [CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAG  GTGAGGG GTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAAACCTTGTGA                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM643927             [                                                                                                                                                                                                                                                                                                        CCGCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGGGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAAT    CGTGCGTGCGTTTATC  TGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAAACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCACCTTCCAGCCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGCTGCCGCCGTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGAGTGGCGAAGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATTTGCCCTTCTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT]


>consensus_4665#0 CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGA AGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGAATAG AGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGA AAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAAC TTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTC GGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGC CTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGAGGGGTTT TTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTG CGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGT TGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTT CAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAA ACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCACCTTCCAG CCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGCTGCCGCC GTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGAGTGGCGA AGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATTTGCCCTT CTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT



consensusID : consensus_4665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGGGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTCTGTGTGTTTGGTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAGTAGCAGCAGCAGCTTGCCAGCAAATCCC]

[+] EMBL BM630078             [CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGGGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTCTGTGTGTTTGGTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAGTAGCAGCAGCAGCTTGCCAGCAAATCCC]


>consensus_4665#1 CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGC AAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGA ATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAG AAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACA TAACTTGCTCCCAACCACTACCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCC CTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTT GGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGG GTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAA ATCGTGCGTGCGTGCGTTTATCTCTGTGTGTTTGGTACGACGTTATTTTTCTACGCCGTG ACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAGTAGCAGCAGCAGCTT GCCAGCAAATCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4665#0      ----CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGC 56
consensus_4665#1      CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGC 60
                           * *****************************************************

consensus_4665#0      AAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGA 116
consensus_4665#1      AAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGA 120
                      ********************************************** *************

consensus_4665#0      ATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAG 176
consensus_4665#1      ATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAG 180
                      ************************************************************

consensus_4665#0      AAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACA 236
consensus_4665#1      AAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACA 240
                      ************************************************************

consensus_4665#0      TAACTTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCC 296
consensus_4665#1      TAACTTGCTCCCAACCACTACCC-AGGCCCAAACCAACATCGTCATCATCAGCTGCCCCC 299
                      *********************** ************************************

consensus_4665#0      CCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTT 356
consensus_4665#1      CCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTT 359
                      ************************************************************

consensus_4665#0      TGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGAGGG 416
consensus_4665#1      TGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAG 419
                      ******************************************************** * *

consensus_4665#0      G---TTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGA 473
consensus_4665#1      GGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGA 479
                      *   ********************************************************

consensus_4665#0      AATCGTGCGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCC 533
consensus_4665#1      AATCGTGCGTGCGTGCGTTTATCTCTGTGTGT--TTGGTACGACGTTATTTTTCTACGCC 537
                      ************************ *******  *** **********************

consensus_4665#0      GTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAA 593
consensus_4665#1      GTGACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAG--TAGCAGCAGC 595
                      *********************************** ************  *  *****  

consensus_4665#0      TCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAA 653
consensus_4665#1      AGCTTGCCAGCAAATCCC------------------------------------------ 613
                        *    **       *                                           

consensus_4665#0      AAAAGAAACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCAC 713
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      CTTCCAGCCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGC 773
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      TGCCGCCGTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGA 833
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      GTGGCGAAGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATT 893
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      TGCCCTTCTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT 942
consensus_4665#1      -------------------------------------------------
                                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)