These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAG--GTGAGGG-GTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAAACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCACCTTCCAGCCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGCTGCCGCCGTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGAGTGGCGAAGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATTTGCCCTTCTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT] [+] EMBL BM595462 [CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAG GTGAGGG GTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAAACCTTGTGA ] [+] EMBL BM643927 [ CCGCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGGGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAAT CGTGCGTGCGTTTATC TGTGTGTGTTTGTTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAATCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAAAAAAGAAACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCACCTTCCAGCCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGCTGCCGCCGTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGAGTGGCGAAGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATTTGCCCTTCTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT] consensusID : consensus_4665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGGGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTCTGTGTGTTTGGTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAGTAGCAGCAGCAGCTTGCCAGCAAATCCC] [+] EMBL BM630078 [CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGCAAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGAATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAGAAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACATAACTTGCTCCCAACCACTACCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCCCCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTTTGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAGGGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGAAATCGTGCGTGCGTGCGTTTATCTCTGTGTGTTTGGTACGACGTTATTTTTCTACGCCGTGACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAGTAGCAGCAGCAGCTTGCCAGCAAATCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4665#0 ----CCGGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGC 56 consensus_4665#1 CCGCTCCGTGGAATCGAGATCGGCCAGGACGGAGTGAGCAGTTTGGGTAACGTGTCGTGC 60 * ***************************************************** consensus_4665#0 AAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAAAGCGAGAAGAGGA 116 consensus_4665#1 AAGAAGAGCCAAGAGTGGTGAAAGGCAGGAGTGCCAGAGAGAGAGAGAGCGAGAAGAGGA 120 ********************************************** ************* consensus_4665#0 ATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAG 176 consensus_4665#1 ATAGAGAAGCGTTACTACCATCTGCAAGCAAGCGAGTGTGAAGAGAAAAGGAGGAGGAAG 180 ************************************************************ consensus_4665#0 AAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACA 236 consensus_4665#1 AAGAAAACCCCGTGATTCGAAAGTTGAACGTGCTCTTATCCAACTAAACACACGCACACA 240 ************************************************************ consensus_4665#0 TAACTTGCTCCCAACCACTACCCCAGGCCCAAACCAACATCGTCATCATCAGCTGCCCCC 296 consensus_4665#1 TAACTTGCTCCCAACCACTACCC-AGGCCCAAACCAACATCGTCATCATCAGCTGCCCCC 299 *********************** ************************************ consensus_4665#0 CCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTT 356 consensus_4665#1 CCTCGGAGTGAACGGAAGAAGAAATTGTGCCCATTCCACGGTCTTCTTCTTCTGCCGTTT 359 ************************************************************ consensus_4665#0 TGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGAGGG 416 consensus_4665#1 TGGCCTCTGTACAATCGAGGTTACCACACGAGGACGGTGTGTGCCAAAACGAGGTGTGAG 419 ******************************************************** * * consensus_4665#0 G---TTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGA 473 consensus_4665#1 GGTTTTTTTCTTCGCCAAAGAGAGAGAGCGAGCCAGCGCGAGCGGAAAAGAAAAAGCGGA 479 * ******************************************************** consensus_4665#0 AATCGTGCGTGCGTGCGTTTATCTGTGTGTGTGTTTGTTACGACGTTATTTTTCTACGCC 533 consensus_4665#1 AATCGTGCGTGCGTGCGTTTATCTCTGTGTGT--TTGGTACGACGTTATTTTTCTACGCC 537 ************************ ******* *** ********************** consensus_4665#0 GTGACGTTGTCACTCTTGACTGTATGTGATCGATAAACCCAGCAGCAGCTTGCCAGCAAA 593 consensus_4665#1 GTGACGTTGTCACTCTTGACTGTATGTGATCGATACACCCAGCAGCAG--TAGCAGCAGC 595 *********************************** ************ * ***** consensus_4665#0 TCCCGTTCAATCGTGTCTAACAAAGCAACCGACGAAAAGTTGCAGCAGGAAGCGAAGCAA 653 consensus_4665#1 AGCTTGCCAGCAAATCCC------------------------------------------ 613 * ** * consensus_4665#0 AAAAGAAACCTTGTGATTTTTTTTTCTTGTTCCTGCGTGTTGCCAACACTCTCCCCCCAC 713 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 CTTCCAGCCCGCGCGCGCGTCATCAAGGCAGGCAAAAACGTGTTACAAAGCAGGCGCAGC 773 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 TGCCGCCGTGTATGTTGTGTGTGTGTGTATGTGTGGTTAGCAAATCAACCAATAGAGAGA 833 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 GTGGCGAAGCGCACCAATACTACCTGGATCTCACGTACAACAGTACGCAACAGCGAAATT 893 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 TGCCCTTCTATTTTTTCGCCGTACCTGTGTGTGTATCGATCGTACGTGT 942 consensus_4665#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||