These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 964 fasta sequence [CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATGTAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAGCGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCCCATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTTGCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCACAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGTACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAACGATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAGCTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTACGTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCGATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGTAACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTATGTT] [+] EMBL BM575191 [CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATGTAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAGCGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCCCATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTTGCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCACAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGTACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAACGATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAGCTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTACGTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGC ] [+] EMBL BM576719 [ ccgCGACTGAAACTTTACCATCGCCAGCACAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCGCTTTCCCCCCGATAGAAGTACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAACGATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGCTTAAAACGGCACTGGAATCAGCTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTACGTCATATTTTTCGTGCTACCGTTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCGATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGTAACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTATGTT] consensusID : consensus_4668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTTATGGTGTCGGTACGAATTGTAGCATGAGCGATTAGCTTCCCCCGTCGTGAAAGAGATCAAGCTCACCGACAGTCTAGCAAATCCTCCGACGGAAGAGGCACTTGCAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTATGCAGCTAGAGGTTGTTCACCAGGAACCGAAAGAGATTGTTGACAACGAGGAAAACGTATTGGAGGAAAATCGACGTGCGCCGCTCGCTGGTGCTAAAGACTTTAAGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGC] [+] EMBL BM613209 [CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTTATGGTGTCGGTACGAATTGTAGCATGAGCGATTAGCTTCCCCCGTCGTGAAAGAGATCAAGCTCACCGACAGTCTAGCAAATCCTCCGACGGAAGAGGCACTTGCAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTATGCAGCTAGAGGTTGTTCACCAGGAACCGAAAGAGATTGTTGACAACGAGGAAAACGTATTGGAGGAAAATCGACGTGCGCCGCTCGCTGGTGCTAAAGACTTTAAGGGCCCAACAAACGACAGACAGCGGGCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGGCACGATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACTCTGGTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4668#0 CCGATTTACTCGATTTGGTTTAATTGGTAACGAAAAGAAAACCCATCGTCGAATTTAATG 60 consensus_4668#1 ------------------------------------------------------------ consensus_4668#0 TAGCGTCCGTGCTGCGGTCTGTTCCCTTGACCAGCAACCCACCAACCGGCTGCGGTTGAG 120 consensus_4668#1 ------------------------------------------------------------ consensus_4668#0 CGGTTGTAGTTCCGGCGTGATAAAAGTAGTGCTCCCCCCGCGAATCCCTTGCATCTGTCC 180 consensus_4668#1 ------------------------------------------------------------ consensus_4668#0 CATTCCTCCGATTGCAGGCCCCATTGTTCGTTGTGGAAGAAAATCACGATGAGCTGGTTT 240 consensus_4668#1 ------------------------------------------------------------ consensus_4668#0 GCGCCACGATAGATAAAACGAGTGTTTGCTGCATCGACTGAAACTGTACCATCGCCAGCA 300 consensus_4668#1 ------------------------------------------------------------ consensus_4668#0 CAGCAAATCGGGAGCACGGCTCTTTTCGCCCGCATTTGCCCCTTTCCCCCCGATAGAAGT 360 consensus_4668#1 ----------------------------CCGGCTTTTGTTTCTTGTGCAACTGCCCGGTT 32 ** ** **** *** * * * consensus_4668#0 ACAGCGGGAACGATGGACGCCAAAATAGAACATGTATCGGTCATTCTTCCCGTCAGCAAC 420 consensus_4668#1 ATGGTGT---CGGTA-----CGAATTGTAGCATGAGCGATTAGCTTCCCCCGTCGTGAAA 84 * * * ** * * ** * * **** * * ****** ** consensus_4668#0 GATCCATTGATAGTTGGCAATGTTAGCTCTAGGAAAAGTTTAAAACGGCACTGGAATCAG 480 consensus_4668#1 GAGATCAAGCTCACCGACAGT-CTAGC-------AAATCCTCCGACGGAAGAGGCACTTG 136 ** * * * ** * **** *** * **** * ** * * consensus_4668#0 CTGTCCCGGTTCCAGAAGAATTTAGCGTGCATTTTATTAGCCGGCATGTGCATTTTTTAC 540 consensus_4668#1 CAAAGCCGGTAGCCCAACAGGCAGAAGCAAACCTTAT------GCAGCTAGAGGTTGTTC 190 * ***** * ** * * * **** *** * * ** * * consensus_4668#0 GTCATATTTTTCGTGCTACCATTCAACGATCCGTCCCGCAGCTCCGAGGTGATCGATCCG 600 consensus_4668#1 ACCAGGAACCGAAAGAGATTGTT-GACAACGAGGAAAACGTATTGGAGGAAAATCGACGT 249 ** * * ** ** * * * * **** * * consensus_4668#0 ATGGAGCACATACAGATAGCACCATTCAAGGAACGGGGCCCAACAAACGACAGACAGCGG 660 consensus_4668#1 GCGCCGCTCGCTGGTGCTAAAGACTTTAAGG------GCCCAACAAACGACAGACAGCGG 303 * ** * * ** **** *********************** consensus_4668#0 GCCGTGGTTGATGCCGTACTGCATTCCTGGAAAGGGTACAAGGAGTACGCCTGGGGGCAC 720 consensus_4668#1 GCCGTGGTTGATGCCGTACTGCATTCTTGGAAAGGGTACAAGGAGTACGCCTGGGGGCAC 363 ************************** ********************************* consensus_4668#0 GATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTTGGCCTTACTCTG 780 consensus_4668#1 GATAATTTAAAGCCCATCTCGATGGGGTACTCCGACTGGTTTGGGCTCGGCCTTACTCTG 423 *********************************************** ************ consensus_4668#0 GTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGG 840 consensus_4668#1 GTCGATTCCCTCGATACGCTCTACATTATGGATTTGCAGGACGAGTACGATGAAGCACGG 483 ************************************************************ consensus_4668#0 GCTTGGGTCGAGAAGTACTTAAAGTTTGACATTAACCGTGAAGTCAATTTTGTTTGAAGT 900 consensus_4668#1 GC---------------------------------------------------------- 485 ** consensus_4668#0 AACCATTCCGTGTCGTTGGTGGGGCTGGTTGAGTGCGTATCATCTGAGCGGGCGATCGTA 960 consensus_4668#1 ------------------------------------------------------------ consensus_4668#0 TGTT 964 consensus_4668#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||