cluster # 4670

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Anopheles gambiae
cluster # 4670 cluster # 4670 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4670#0 length = 945 sequences # 1

consensus_4670#1 length = 405 sequences # 1
consensus_4670#2 length = 380 sequences # 1

consensusID : consensus_4670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 945
fasta sequence

                              [GCAAGAATTCCCGAGGTTAAAAGCAATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTAGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAGTTTTAGCAGTTTGCTTATCCGCGCGACAAAGATAACAAACAAANATGGGGGACAAAGACGAACGACAGCCACACAGTGGAAACCGAGTGAGTTTGCTAACATTAGGTAATAGTCAGTACTAGTNAGTGGTCAGTAGTAGTCAAGTNACNACAGANACATCGGANGAAGAACAAGAAGCACACAACATTAGCCACAGCAATANAGCGATACAAAAGAGCCAAACAACCACCAAAGGTANGATTTCATACAAAGCCACTTCACCACCAAACCATANATACAAACAATAGCACACGANCAGCAAAAGCCNGAAGGATTGGCACACGGAATGGAAAACACANGNAATCCCATGCTCACATAATCCGGCCAGAANGNACGTAAATAAAACGTCAGTCCCACAAGAAACTNTGAAACGACGAAAGTGAACTTCACGATTCGGNGTTGTCGCGGNGTCGGNAAGGTGTCTACGATGATTANGAAGAGAGAAATNACACCGCAATTTTNTATTTCANAACACACAACAACAACGGGGNGTGTGAGGGCGAANATANCCTAGCGAGGGGTATATACATACCGGNAGGTGAAGAGAGGG]

[+] EMBL AL932192             [GCAAGAATTCCCGAGGTTAAAAGCAATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTAGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAGTTTTAGCAGTTTGCTTATCCGCGCGACAAAGATAACAAACAAANATGGGGGACAAAGACGAACGACAGCCACACAGTGGAAACCGAGTGAGTTTGCTAACATTAGGTAATAGTCAGTACTAGTNAGTGGTCAGTAGTAGTCAAGTNACNACAGANACATCGGANGAAGAACAAGAAGCACACAACATTAGCCACAGCAATANAGCGATACAAAAGAGCCAAACAACCACCAAAGGTANGATTTCATACAAAGCCACTTCACCACCAAACCATANATACAAACAATAGCACACGANCAGCAAAAGCCNGAAGGATTGGCACACGGAATGGAAAACACANGNAATCCCATGCTCACATAATCCGGCCAGAANGNACGTAAATAAAACGTCAGTCCCACAAGAAACTNTGAAACGACGAAAGTGAACTTCACGATTCGGNGTTGTCGCGGNGTCGGNAAGGTGTCTACGATGATTANGAAGAGAGAAATNACACCGCAATTTTNTATTTCANAACACACAACAACAACGGGGNGTGTGAGGGCGAANATANCCTAGCGAGGGGTATATACATACCGGNAGGTGAAGAGAGGG]




>consensus_4670#0
GCAAGAATTCCCGAGGTTAAAAGCAATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCG
CACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCG
CCGTCAGTAATGTGTTGTGCTGGTTAGGTAGAATTGGTGATAGACAAAAAATGGGCCACA
CATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAA
CAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAA
CGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAGTTTT
AGCAGTTTGCTTATCCGCGCGACAAAGATAACAAACAAANATGGGGGACAAAGACGAACG
ACAGCCACACAGTGGAAACCGAGTGAGTTTGCTAACATTAGGTAATAGTCAGTACTAGTN
AGTGGTCAGTAGTAGTCAAGTNACNACAGANACATCGGANGAAGAACAAGAAGCACACAA
CATTAGCCACAGCAATANAGCGATACAAAAGAGCCAAACAACCACCAAAGGTANGATTTC
ATACAAAGCCACTTCACCACCAAACCATANATACAAACAATAGCACACGANCAGCAAAAG
CCNGAAGGATTGGCACACGGAATGGAAAACACANGNAATCCCATGCTCACATAATCCGGC
CAGAANGNACGTAAATAAAACGTCAGTCCCACAAGAAACTNTGAAACGACGAAAGTGAAC
TTCACGATTCGGNGTTGTCGCGGNGTCGGNAAGGTGTCTACGATGATTANGAAGAGAGAA
ATNACACCGCAATTTTNTATTTCANAACACACAACAACAACGGGGNGTGTGAGGGCGAAN
ATANCCTAGCGAGGGGTATATACATACCGGNAGGTGAAGAGAGGG

consensusID : consensus_4670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTTGTCGTCCCTTCATCATCCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTCAATACCACCCTGGGTGGGATTTTTATATAAGTATGTGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACCGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAATTTTAGCAGTTGCTTATCGCGCGGAAAAGATAACAAACAAA]

[+] EMBL BX618276             [AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTTGTCGTCCCTTCATCATCCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTCAATACCACCCTGGGTGGGATTTTTATATAAGTATGTGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACCGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAATTTTAGCAGTTGCTTATCGCGCGGAAAAGATAACAAACAAA]




>consensus_4670#1
AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTTGTCGTCCCTTCATCAT
CCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTCAATACCACCCTGGGTG
GGATTTTTATATAAGTATGTGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAAT
GGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTG
GCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACCGC
GTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAA
TCAATTTTAGCAGTTGCTTATCGCGCGGAAAAGATAACAAACAAA

consensusID : consensus_4670#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACAAAGCACAGAATGGCAAGCAATCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACAC]

[-] EMBL BX622464             [AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACAAAGCACAGAATGGCAAGCAATCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACAC]




>consensus_4670#2
AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACAAAGCACAGAATGGCAAGCAA
TCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTA
CTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTA
GGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCC
TCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTG
CGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAAC
AGTAGTGTAAGCAAAAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4670#0      --------------------------------GCAAGA---ATTCCCGAGGTTAAAAGCA 25
consensus_4670#2      AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACA-AAGCACAGAATGGCAAGCA 59
consensus_4670#1      ----------------AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTT 44
                                                           *   *                  

consensus_4670#0      ATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATT 85
consensus_4670#2      ATCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATT 119
consensus_4670#1      GTCGTCCCTTCATCATCCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTC 104
                       **   *   **  ** *   *  ****    *** * *  ** * ****     *  * 

consensus_4670#0      ACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTT 145
consensus_4670#2      ACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTT 179
consensus_4670#1      AATACCACCCTG-GGTGGGATTTTTATATAA-GTAT--------GTGTGTTGTGCTGGTT 154
                      * **  *  *** ****   ****   * ** *            ***************

consensus_4670#0      AGGTAGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTC 205
consensus_4670#2      AGGT-GAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTC 238
consensus_4670#1      AGGT-GAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTC 213
                      **** *******************************************************

consensus_4670#0      CCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGAC 265
consensus_4670#2      CCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGAC 298
consensus_4670#1      CCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGAC 273
                      ************************************************************

consensus_4670#0      TGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTA 325
consensus_4670#2      TGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTA 358
consensus_4670#1      TGCGCTTTGCGGGCGCATAATTACCGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTA 333
                      ************************ ***********************************

consensus_4670#0      ACAGTAGTGTAAGCAAAAACACACAAATCAGTTTTAGCAGTTTGCTTATCCGCGCGACAA 385
consensus_4670#2      ACAGTAGTGTAAGCAAAAACAC-------------------------------------- 380
consensus_4670#1      ACAGTAGTGTAAGCAAAAACACACAAATCAATTTTAGCAGTT--GCTTATCGCGCGGAAA 391
                      **********************                                      

consensus_4670#0      AGATAACAAACAAANATGGGGGACAAAGACGAACGACAGCCACACAGTGGAAACCGAGTG 445
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      AGATAACAAACAAA---------------------------------------------- 405
                                                                                  

consensus_4670#0      AGTTTGCTAACATTAGGTAATAGTCAGTACTAGTNAGTGGTCAGTAGTAGTCAAGTNACN 505
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      ACAGANACATCGGANGAAGAACAAGAAGCACACAACATTAGCCACAGCAATANAGCGATA 565
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      CAAAAGAGCCAAACAACCACCAAAGGTANGATTTCATACAAAGCCACTTCACCACCAAAC 625
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      CATANATACAAACAATAGCACACGANCAGCAAAAGCCNGAAGGATTGGCACACGGAATGG 685
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      AAAACACANGNAATCCCATGCTCACATAATCCGGCCAGAANGNACGTAAATAAAACGTCA 745
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      GTCCCACAAGAAACTNTGAAACGACGAAAGTGAACTTCACGATTCGGNGTTGTCGCGGNG 805
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      TCGGNAAGGTGTCTACGATGATTANGAAGAGAGAAATNACACCGCAATTTTNTATTTCAN 865
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      AACACACAACAACAACGGGGNGTGTGAGGGCGAANATANCCTAGCGAGGGGTATATACAT 925
consensus_4670#2      ------------------------------------------------------------
consensus_4670#1      ------------------------------------------------------------
                                                                                  

consensus_4670#0      ACCGGNAGGTGAAGAGAGGG 945
consensus_4670#2      --------------------
consensus_4670#1      --------------------